Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1651 237 1e-57 seq314 150 2e-31 seq1282 145 6e-30 seq981 129 5e-25 seq1524 118 9e-22 >seq1651 Length=647375 Score = 237 bits (262), Expect = 1e-57 Identities = 900/1394 (65%), Gaps = 35/1394 (3%) Strand=Plus/Plus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 ||||| || ||||||| ||| || | ||| || || || || |||||||| ||||| || Sbjct 382053 TTGTCGACAGTAAATTGAATCGCATTCGCAGCTGGTTTTGTTCGCAAATAATACATACCG 382112 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 || || | ||| ||||||||| | | || || | ||| | ||| || ||| Sbjct 382113 GTCTTGAGACCCATTTTCCAAGCATAGAAATGGATAGAACTCATCTTCATGTATGTCGGT 382172 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 || || | |||||||||||||||||| ||||||||||| | ||||| || || ||| Sbjct 382173 TGTGCCACATGAATATTAAATGATTGACTCTGATCAATAAATGCACCGCGGTCCGCTGCC 382232 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || ||| ||||||| || ||||| || ||||| ||| || | | || Sbjct 382233 ATTTTAATAGTCGTTTTCACCGATATCTCCCAAACGGTTTTATAAGTTTCGCGAAT-TGC 382291 Query 129019 TTTGGTATTTCTTC-AATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCAT 129077 | | | | ||| ||| |||||||| || | ||||| | | | |||| ||| Sbjct 382292 CTCCGGAATACTTGTAATATTCTGCACAGAACCATAATTTGCCACCAACTGATTTCTCAT 382351 Query 129078 CTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATT----A 129133 | |||||| | ||||||| ||| ||||| |||| ||| || || ||| | Sbjct 382352 GTCTTCGTTCCATAAATTCAATTTAATCAATTCGT---TCAC-TAAATGAGGATTCACCA 382407 Query 129134 CTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACG 129193 | ||||| || || | | || || || ||||| || ||| | || ||||||| Sbjct 382408 CCTGAAACTCGCCAGATAGCACACGACGTGTATAAATATTTGACGTGTAAGGTTCAAACG 382467 Query 129194 ATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCG 129253 ||||||| || || | ||||| ||||| | || || ||||| ||| | | | || Sbjct 382468 ATTCATTATTCCCAAGAATTTGTGCCGTCGAAGCAGTTGGCATCGGAGCAATCAATAACG 382527 Query 129254 AGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATG 129313 | || || | ||| | || |||| | || ||| || |||| | ||||| | | Sbjct 382528 AATTGCGAACACCATTCTTGCTAATCTTTTCTTTCAACGAGTTCCAATTCCACAGAGCAG 382587 Query 129314 TGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGT 129373 | ||||| | ||||| || | |||||||| || ||| | ||||| | Sbjct 382588 TTGGTGTTACTTCCCACATATCAAACTGCAATATCCCTTTACTCACTGGACTTCCTGCAT 382647 Query 129374 AGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAAT 129433 | | || | || || || ||||||||| || || ||||| || || || ||| Sbjct 382648 ACGTCTCATAGGTTCCATATTTTTCTGCCAATTCACAGCTTGCTTCTAAAGCCCCGTAAT 382707 Query 129434 AAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTA-CGGCA-- 129490 |||| ||||| || | ||||||| || || | || |||||||| | ||| Sbjct 382708 AAATGGTTTCAAATATCTCCATGTTCAATTTTTGTGCTTTTTCACTTTCGTATCCGCACT 382767 Query 129491 TACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTT 129550 | || ||| ||| || ||||| ||||||| || | || || ||||||||| Sbjct 382768 TCATCAGCAT---AAAAACATCAGCCAATCCTTGAACCCCAATCCCAATTGGTCGATGTC 382824 Query 129551 TTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTA 129610 | | ||| ||| || ||| |||||||| || || || || ||||| || | Sbjct 382825 TACGATTCGATCGTTCTGCTTCTGGTTCCGGATAGTAATTAATATCGATTATTTTATTCA 382884 Query 129611 AA-TTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGT-ACTCGCCTAC 129668 || || ||| | || | ||| | | | || ||||| | ||| | | | | || | Sbjct 382885 AATTTATTGTCAAC-ACTTTGGCCATATGCTTCAACATATTAAAGTCATAAGTATTCT-C 382942 Query 129669 ATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTT 129728 ||| | | || |||| ||| | |||||| || ||||| || || ||| |||| | Sbjct 382943 ATCTA---CCACGAATTTATTCAATGCAATCGACGCTAAATTACATACAGCAATTTCATC 382999 Query 129729 TTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATG 129788 | |||| || || | ||||||| ||||||||| ||| ||| || ||||||| Sbjct 383000 TCGATCACAATATTCCATGATTTCGGTGCACAAATTGCTACAGCGAATTGTACCCAAATT 383059 Query 129789 CTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 || |||||| ||| |||||| |||||||| |||| ||| |||||||| || ||||| Sbjct 383060 CTGTTGATTTGATTTACGGTTGCACGCATCTTTATACAACATATACGGCGTACCGGTTTC 383119 Query 129849 GACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGT--CTTACA--A 129904 ||||| | ||| ||| | | | |||||||| || | ||| |||| | Sbjct 383120 TACTTGTGATTCATAAATTTTATACCAAATATCTCGAGCTTTCACTTGTTCCTTATAGCG 383179 Query 129905 ATTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTC--TGAGCCGTGTACGGT 129962 ||| || || || || ||| | || || ||||| | || | Sbjct 383180 TTTTTCC----TTTTCATACTTTTGATATAATTCATCGAATTCATTTCCCCAACAATCAA 383235 Query 129963 GTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCG 130022 | || || || | ||| | |||||||||| |||||||| |||| ||||| ||||| Sbjct 383236 ATAGACCA--GGACACTCATGTGGACACATCAGACTCCACACATCATCAGCTTCTACTCG 383293 Query 130023 TTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTC 130082 |||||||| ||||| || | ||| || || || |||||||||| || || ||| Sbjct 383294 CTTCATAAATAAATCAGGAATCCAAAGAGCATAAAACAAATCTCTTGCACGATCATTCTC 383353 Query 130083 GGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAAC 130142 |||| |||| |||| | || ||||| | || || || ||||| ||||| | Sbjct 383354 AACACCAGTGTTCTTCTTCAAATTTAGAAAATCTTTTATATCAGCATGCCATGGTTCTAA 383413 Query 130143 ATAAATTGCCATTG 130156 ||||| ||||||| Sbjct 383414 GTAAATAGCCATTG 383427 >seq314 Length=315434 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || |||||||| | || || ||||| ||| | || Sbjct 276036 ATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATTACCCTCGAAGTTGAACCATCC 276095 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || |||||||| || || || |||||||| |||||| Sbjct 276096 GATACTATCGAAAATGTAAAGGCCAAGATTCAAGATAAAGAAGGCATTCCACCAGATCAA 276155 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || |||||||| ||||| || || ||| |||||| | || || |||||| Sbjct 276156 CAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACCTTATCAGACTACAAC 276215 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| ||| | ||||| || |||||| | || || ||| Sbjct 276216 ATCCAAAAGGAATCTACCCTTCATTTGGTGTTGCGACTTCGTGGTGGT 276263 >seq1282 Length=29674 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||||| || || ||||| | ||| | ||||| ||| | | Sbjct 29019 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTAGAACCTTCT 28960 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || ||||||||||| ||||||||||| ||||| Sbjct 28959 GATACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGATCAG 28900 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| | || ||| || || | || || |||||| Sbjct 28899 CAACGTTTGATTTTTGCTGGTAAACAACTTGAAGATGGTCGTACATTATCTGACTACAAC 28840 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||||||||| || | |||||||| || || | || |||||| Sbjct 28839 ATCCAAAAAGAATCGACTCTGCATTTAGTATTACGTCTACGTGGAGGT 28792 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||||| || || ||||| | ||| | ||||| ||| | | Sbjct 29247 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29188 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || ||||||||||| |||||||| || ||||| Sbjct 29187 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 29128 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| ||||| || | || ||| || || | || || |||||| Sbjct 29127 CAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAAC 29068 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || || | |||||||| ||||| | ||||| ||| Sbjct 29067 ATCCAAAAGGAGTCTACTCTCCATTTAGTATTGCGTCTTCGCGGTGGT 29020 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||||| || || ||||| | ||| | ||||| ||| | | Sbjct 29475 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29416 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || ||||||||||| |||||||| || ||||| Sbjct 29415 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 29356 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| ||||| || | || ||| || || | || || |||||| Sbjct 29355 CAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAAC 29296 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || || | |||||||| ||||| | ||||| ||| Sbjct 29295 ATCCAAAAGGAGTCTACTCTCCATTTAGTATTGCGTCTTCGCGGTGGT 29248 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| || || ||||| || | ||| | ||||| || | | Sbjct 28791 ATGCAGATCTTCGTCAAAACCTTGACTGGTAAGACCATTACTTTGGAAGTCGAGCCATCA 28732 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| || || || |||||||| || ||||| || |||||| Sbjct 28731 GATACCATTGAAAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAA 28672 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| | |||||| ||||| | || ||||| || Sbjct 28671 CAACGTTTAATTTTTGCTGGTAAACAACTTGAGGATGGACGCACATTATCGGATTATAAT 28612 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| || | ||||| || | || ||| | || || Sbjct 28611 ATCCAGAAGGAATCTACACTCCATTTGGTCCTTCGTTTGAGAGGCGG 28565 >seq981 Length=59034 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || ||||| || || |||||||| |||| || || |||||| | Sbjct 46708 AAGATGCAGATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTAGAGGTGGAACCA 46767 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | ||| ||||| ||||| || ||||| |||||||| ||| Sbjct 46768 TCAGATACAATCGAAAATGTGAAAGCCAAAATCCAAGATAAAGAGGGCATTCCACCAGAT 46827 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||| | || || || || || || || || ||| ||| || | ||||| ||| Sbjct 46828 CAACAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCCGTACGTTGTCCGACTAC 46887 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || ||| | || || || ||||| | || || ||| Sbjct 46888 AATATCCAGAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTCCGTGGTGGT 46938 >seq1524 Length=218836 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||||| || |||||||| | ||| | ||||| ||| | | Sbjct 304 ATGCAAATATTTGTCAAAACTTTGACTGGTAAAACCATTACTTTAGAAGTAGAACCTTCT 245 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || ||||||||||| |||||||| || ||||| Sbjct 244 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAG 185 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || || | || ||| || || | |||||||||||| Sbjct 184 CAGCGTTTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGTACATTGTCCGATTACAAC 125 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || ||||| ||||| | || || ||| Sbjct 124 ATCCAGAAGGAGTCTACTCTTCACTTAGTATTGCGTCTTCGTGGTGGT 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419719140066580