Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq314 141 2e-28
seq1282 109 1e-18
seq261 105 2e-17
seq1657 93.3 1e-13
>seq314
Length=315434
Score = 141 bits (156), Expect = 2e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || |||| | || | ||||| || ||| |||||||| || ||||| |
Sbjct 276262 CCACCACGAAGTCGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGAT 276203
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| || ||||| |||||||| || || ||||||| ||| |||||| |||
Sbjct 276202 AAGGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGA 276143
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||||||||| || || || || || || ||||| |||| |||| | ||| |||
Sbjct 276142 ATGCCTTCTTTATCTTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACT 276083
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
||||| || || || || || || |||||||| || || |||||||| |||
Sbjct 276082 TCGAGGGTAATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCATGATG 276032
>seq1282
Length=29674
Score = 109 bits (120), Expect = 1e-18
Identities = 142/195 (73%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || ||||||||||| || | | |||||||| || || | |||||| || || ||
Sbjct 28600 TTCCTTCTGGATATTATAATCCGATAATGTGCGTCCATCCTCAAGTTGTTTACCAGCAAA 28659
Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|| | ||| ||||| |||| || || ||||| || |||||||| || ||||| ||
Sbjct 28660 AATTAAACGTTGTTG---ATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAAC 28716
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|||||| || | ||| | || ||||| | || || ||||| || |||| || ||
Sbjct 28717 GTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGTCTTACCAGTCAAGGTTTT 28776
Query 288459 GACGAATATCTGCAT 288473
|||||| ||||||||
Sbjct 28777 GACGAAGATCTGCAT 28791
Score = 104 bits (114), Expect = 6e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||||||||| || ||||| | | || || || ||||| | |||||| || || ||
Sbjct 28828 TTCTTTTTGGATGTTGTAGTCAGATAATGTACGACCATCTTCAAGTTGTTTACCAGCAAA 28887
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|||| ||| || ||| ||| || ||||| || || ||||| || || || || ||
Sbjct 28888 AATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACATT 28947
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
||| || | ||| | ||||||||| | || || || || || |||| ||| |||||
Sbjct 28948 TTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGAC 29007
Query 288462 GAATATCTGCAT 288473
||| || |||||
Sbjct 29008 GAAAATTTGCAT 29019
>seq261
Length=215733
Score = 105 bits (116), Expect = 2e-17
Identities = 224/326 (69%), Gaps = 9/326 (3%)
Strand=Plus/Minus
Query 72497 TTACGGTGT-TGCAAAGTTGTACGCTTATTGGATCTGTAA-AAATTACCGTGAGTCGTAT 72554
|||| | || ||| || |||| ||||||||||| ||||| ||| || |||||| | |||
Sbjct 14729 TTACAGCGTGTGCTAAACTGTATGCTTATTGGAT-TGTAACAAACTATCGTGAGGCATAT 14671
Query 72555 AACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAG 72614
| |||| || ||||| ||| |||||||| || || | | || | |
Sbjct 14670 GATATGTTTGCGTGCAATGGTATTCTATTCAATCATGAATCACCTAGACGTGGTGAAAAT 14611
Query 72615 TTCGTGACTCGTAAAATCACGAAGGTG-GTCGCGAATATTTTCAATGGTGTCGAAA--AA 72671
|| || || || || || || | | | || || || |||| | | | || || ||
Sbjct 14610 TTTGTAACACGAAAGATAAC-ACGTTCAGTTGCAAAAATTT--ATTTGAATCAAATGGAA 14554
Query 72672 TGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTA 72731
| | || | |||||| ||||| | ||| | |||||||| |||| | ||||||||
Sbjct 14553 TCGTTCGATTTAGGTAATTTAGATTCAAAACGTGATTGGGGCCATGCCCAAGATTACGTG 14494
Query 72732 GAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGG 72791
|||||||||||| ||||| |||||| ||||| || || || | |||||| || |||||
Sbjct 14493 GAAGCAATGTGGATGATGTTGCAACGAGATAAACCAGAAGATTTTGTGATAGCGACAGGT 14434
Query 72792 AAAACAACGAGCGTTCGTGAGTTCGT 72817
|||| || |||||||| || ||
Sbjct 14433 GAAACGCATAGTGTTCGTGAATTTGT 14408
>seq1657
Length=82118
Score = 93.3 bits (102), Expect = 1e-13
Identities = 98/128 (77%), Gaps = 2/128 (2%)
Strand=Plus/Minus
Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
|||||||||||| ||||| |||||||| |||||||| ||||| || | |||| | ||
Sbjct 82099 TGGGATTCCTTCCTTATCTTGGATTTTGGCTTTCACATTTTCAATCGTATCGGATGGCTC 82040
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATT 288482
|| || || ||||| || || || |||| || || ||||| |||||||| |||||
Sbjct 82039 AACCTCCAGGGTGATAGTTTTGCCAGTCAATGTTTTAACGAAGATCTGCAT--CTTTATT 81982
Query 288483 CTAATATT 288490
|||| |||
Sbjct 81981 CTAAAATT 81974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179628221994296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |