Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq314 141 2e-28 seq1282 109 1e-18 seq261 105 2e-17 seq1657 93.3 1e-13 >seq314 Length=315434 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| | || | ||||| || ||| |||||||| || ||||| | Sbjct 276262 CCACCACGAAGTCGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGAT 276203 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| |||||||| || || ||||||| ||| |||||| ||| Sbjct 276202 AAGGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGA 276143 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| || || || || || || ||||| |||| |||| | ||| ||| Sbjct 276142 ATGCCTTCTTTATCTTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACT 276083 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| || || || || || || |||||||| || || |||||||| ||| Sbjct 276082 TCGAGGGTAATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCATGATG 276032 >seq1282 Length=29674 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||||||||| || | | |||||||| || || | |||||| || || || Sbjct 28600 TTCCTTCTGGATATTATAATCCGATAATGTGCGTCCATCCTCAAGTTGTTTACCAGCAAA 28659 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || | ||| ||||| |||| || || ||||| || |||||||| || ||||| || Sbjct 28660 AATTAAACGTTGTTG---ATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAAC 28716 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | ||| | || ||||| | || || ||||| || |||| || || Sbjct 28717 GTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGTCTTACCAGTCAAGGTTTT 28776 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 28777 GACGAAGATCTGCAT 28791 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||| | | || || || ||||| | |||||| || || || Sbjct 28828 TTCTTTTTGGATGTTGTAGTCAGATAATGTACGACCATCTTCAAGTTGTTTACCAGCAAA 28887 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| || ||| ||| || ||||| || || ||||| || || || || || Sbjct 28888 AATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACATT 28947 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||||||||| | || || || || || |||| ||| ||||| Sbjct 28948 TTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGAC 29007 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 29008 GAAAATTTGCAT 29019 >seq261 Length=215733 Score = 105 bits (116), Expect = 2e-17 Identities = 224/326 (69%), Gaps = 9/326 (3%) Strand=Plus/Minus Query 72497 TTACGGTGT-TGCAAAGTTGTACGCTTATTGGATCTGTAA-AAATTACCGTGAGTCGTAT 72554 |||| | || ||| || |||| ||||||||||| ||||| ||| || |||||| | ||| Sbjct 14729 TTACAGCGTGTGCTAAACTGTATGCTTATTGGAT-TGTAACAAACTATCGTGAGGCATAT 14671 Query 72555 AACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAG 72614 | |||| || ||||| ||| |||||||| || || | | || | | Sbjct 14670 GATATGTTTGCGTGCAATGGTATTCTATTCAATCATGAATCACCTAGACGTGGTGAAAAT 14611 Query 72615 TTCGTGACTCGTAAAATCACGAAGGTG-GTCGCGAATATTTTCAATGGTGTCGAAA--AA 72671 || || || || || || || | | | || || || |||| | | | || || || Sbjct 14610 TTTGTAACACGAAAGATAAC-ACGTTCAGTTGCAAAAATTT--ATTTGAATCAAATGGAA 14554 Query 72672 TGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTA 72731 | | || | |||||| ||||| | ||| | |||||||| |||| | |||||||| Sbjct 14553 TCGTTCGATTTAGGTAATTTAGATTCAAAACGTGATTGGGGCCATGCCCAAGATTACGTG 14494 Query 72732 GAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGG 72791 |||||||||||| ||||| |||||| ||||| || || || | |||||| || ||||| Sbjct 14493 GAAGCAATGTGGATGATGTTGCAACGAGATAAACCAGAAGATTTTGTGATAGCGACAGGT 14434 Query 72792 AAAACAACGAGCGTTCGTGAGTTCGT 72817 |||| || |||||||| || || Sbjct 14433 GAAACGCATAGTGTTCGTGAATTTGT 14408 >seq1657 Length=82118 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||||||||| ||||| |||||||| |||||||| ||||| || | |||| | || Sbjct 82099 TGGGATTCCTTCCTTATCTTGGATTTTGGCTTTCACATTTTCAATCGTATCGGATGGCTC 82040 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATT 288482 || || || ||||| || || || |||| || || ||||| |||||||| ||||| Sbjct 82039 AACCTCCAGGGTGATAGTTTTGCCAGTCAATGTTTTAACGAAGATCTGCAT--CTTTATT 81982 Query 288483 CTAATATT 288490 |||| ||| Sbjct 81981 CTAAAATT 81974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179628221994296