Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1651 156 4e-33 seq1282 104 2e-17 seq314 104 2e-17 seq1524 98.7 1e-15 seq981 98.7 1e-15 >seq1651 Length=647375 Score = 156 bits (172), Expect = 4e-33 Identities = 682/1069 (64%), Gaps = 29/1069 (3%) Strand=Plus/Plus Query 152708 CGCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCGCAGCGCCACGAGTA 152767 ||| || || ||||| |||||||||||||| || || ||||| || ||| | || Sbjct 382079 CGCAGCTGGTTTTGTTCGCAAATAATACATACCGGTCTTGAGACCCATTTTCCAAGCATA 382138 Query 152768 ATTGTGAATCGAAGTCATCACAGCGTACGTCGGTTGCGCCACGAACAGATTAAACGATTG 152827 || || ||| ||||| ||| |||||||| ||||| | |||||| ||||| Sbjct 382139 GAAATGGATAGAACTCATCTTCATGTATGTCGGTTGTGCCACATGAATATTAAATGATTG 382198 Query 152828 GCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAATCATGCGTTTTG-CCTTCA 152886 |||||||| || || || ||||| || ||||| | ||| | |||||| || | Sbjct 382199 ACTCTGATCAATAAATGCACCGCGGTCCGCTGCCATTTTAATAGT-CGTTTTCACCGATA 382257 Query 152887 TCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTA------TCCGGTATACCTTCAATGT 152940 ||||||| ||||||| || | ||| ||| | ||||| |||| | ||| | Sbjct 382258 TCTCCCAAACGGTTTTATA---AGTTT---CGCGAATTGCCTCCGGAATACTTGTAATAT 382311 Query 152941 TCTGAATAGAGCCCTTGTGTGCAAAAATAGCGTTTCGTATTTCGGGCGTGTACACGTTCA 153000 |||| | ||| || | | ||| | | |||| || || | | | |||| Sbjct 382312 TCTGCACAGAACCATAATTTGCCACCAACTGATTTCTCATGTCTTCGTTCCATAAATTCA 382371 Query 153001 GTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTC 153060 |||||| | || | | || | | || ||||| ||||||||||| | | ||| | Sbjct 382372 ATTTAATCAATTCGTTCACTAAATGAGGATTCACCACCTGAAACTCGCCAGATAGCACAC 382431 Query 153061 GTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAG 153120 | | ||| | ||| ||| |||||||||| ||||| ||||| || || ||||| | Sbjct 382432 GACGTGTATAAATATTTGACGTGTAAGGTTCAAACGATTCATTATTCCCAAGAATTTGTG 382491 Query 153121 CCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAA 153180 |||| | || || ||||| || | ||| || ||||| || | || | | | || Sbjct 382492 CCGTCGAAGCAGTTGGCATCGGAGCAATCAATAACGAATTGCGAACACCATTCTTGCTAA 382551 Query 153181 TGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGT 153240 | | || ||||||| | ||||| |||||| || | ||||| | | |||||| || Sbjct 382552 TCTTTTCTTTCAACGAGTTCCAATTCCACAGAGCAGTTGGTGTTACTTCCCACATATCAA 382611 Query 153241 ACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTT 153300 |||| || | ||| ||| | ||||| || ||| |||| ||| | || | || Sbjct 382612 ACTGCAATATCCCTTTACTCACTGGACTTCCTGCATACGTCTCATAGGTTCCATATTTTT 382671 Query 153301 GGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTAT 153360 |||| ||| ||||| || || | || || || || |||||||| || | | | Sbjct 382672 CTGCCAATTCACAGCTTGCTTCTAAAGCCCCGTAATAAATGGTTTCAAATATCTCCATGT 382731 Query 153361 TGAGAACGGCCGCTTCTTCGCTCTCGTA-CGGCATGCGCAGCAGCACAAAGGCGTCGGCC 153419 | | |||| ||| || ||||| | ||| || ||||| ||| | || ||| Sbjct 382732 TCAATTTTTGTGCTTTTTCACTTTCGTATCCGCA-CTTCATCAGCATAAAAACATCAGCC 382790 Query 153420 AGACCCTGGATACCGACGCCGATGGGTCGATG-CTTC---TCG-TTGCTGCGCCTCGCGC 153474 | || || | || | || || |||||||| || | ||| | | | || || | Sbjct 382791 AATCCTTGAACCCCAATCCCAATTGGTCGATGTCTACGATTCGATCGTTCTGCTTCTGGT 382850 Query 153475 TCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAG 153534 || ||||||| ||| |||||| ||||| || | || || |||||| | Sbjct 382851 TC-----CGGATAGTAATTAATATCGATTATTTTATTCAAATTTATTGTCAACACTTTGG 382905 Query 153535 TTATCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCA 153594 || ||| | | | || ||||| || | || || || ||| || ||||| Sbjct 382906 CCATATGCTTCAACATATTAAAGTCATAAGTATTCTCATCTAC---CACGAATTTATTCA 382962 Query 153595 CGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCT 153654 ||||| ||||| | |||||| || || | || || || | || | || ||| | Sbjct 382963 ATGCAATCGACGCTAAATTACATACAGCAATTTCATCTCGATCACAATATTCCATGATTT 383022 Query 153655 CGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGC 153714 ||| ||| | ||||| || || |||||||| || ||||| ||| || |||| Sbjct 383023 CGGTGCACAAATTGCTACAGCGAATTGTACCCAAATTCTGTTGATTTGATTTACGGTTGC 383082 Query 153715 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTC 153763 |||| ||||| | | ||| ||||| ||||| || ||||| | ||| Sbjct 383083 ACGCATCTTTATACAACATATACGGCGTACCGGTTTCTACTTGTGATTC 383131 >seq1282 Length=29674 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| |||||||| | | ||||||||||| ||||||||||| | Sbjct 29021 CCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 29080 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || ||||| || || | | |||||| ||| || || || || || Sbjct 29081 AATGTACGTCCATCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGA 29140 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | ||| | ||| || | | || || Sbjct 29141 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACT 29200 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| |||||| || ||||| ||||| Sbjct 29201 TCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29247 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| |||||||| | | ||||||||||| ||||||||||| | Sbjct 29249 CCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 29308 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || ||||| || || | | |||||| ||| || || || || || Sbjct 29309 AATGTACGTCCATCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGA 29368 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | ||| | ||| || | | || || Sbjct 29369 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACT 29428 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| |||||| || ||||| ||||| Sbjct 29429 TCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29475 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-G 138444 ||||||||| |||||| | || ||||| | | || ||||| || || || || || | Sbjct 28563 AGCCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATCCG 28622 Query 138445 CTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 | || || || ||||| ||||||||||| | | | |||| ||| ||||| || ||| Sbjct 28623 ATAAT-GTGCGTCCATCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGA 28681 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || ||||| ||||| ||| || ||| | | ||| | ||| || | | ||| Sbjct 28682 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCTCG 28741 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | || |||||||||| ||||| || || |||||||| Sbjct 28742 ACTTCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 28791 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || || | ||| || |||||||| | | || || ||||| ||||||||||| | | Sbjct 28793 CCTCCACGTAGACGTAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGAT 28852 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || || ||||||||||| | | | || | ||| || || || || || Sbjct 28853 AAT-GTACGACCATCTTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGG 28911 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| || || | | ||| | ||| || | | || || Sbjct 28912 AATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCTAC 28971 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| |||||| || ||||| ||||| Sbjct 28972 TTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29019 >seq314 Length=315434 Score = 104 bits (114), Expect = 2e-17 Identities = 157/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 ||||| || ||||| | | | || |||||||| ||||||||||| | ||| |||| Sbjct 276250 CGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTC--TGATAAGGTGCGAC 276193 Query 138460 --TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTT 138517 || || | ||||||||||| | |||| | ||| ||||| || || || || ||||||| Sbjct 276192 CATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCTT 276133 Query 138518 TGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTC 138576 | || ||| | || | |||| | ||| | || |||| | || || |||| || Sbjct 276132 TATC-TTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTA 276074 Query 138577 AGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | |||||||| || ||||| || ||||| ||||||||| Sbjct 276073 ATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCATG 276035 >seq1524 Length=218836 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| ||||| || | | |||||||| || |||||||| ||| | Sbjct 78 CCACCACGAAGACGCAATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAC 137 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || ||||| ||||| | | || | |||||| || || ||||| Sbjct 138 AATGTACGTCCATCTTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGA 197 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | ||| | ||| || | | || || Sbjct 198 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCTACT 257 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||||||||||| |||||| ||||| || ||||| Sbjct 258 TCTAAAGTAATGGTTTTACCAGTCAAAGTTTTGACAAATATTTGCAT 304 >seq981 Length=59034 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || || || | | |||||||||| || || ||||||||| | Sbjct 46937 CCACCACGGAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCGGAC 46878 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||| ||||| | |||| | ||| ||||| || || || Sbjct 46877 AACGTACGGCCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGA 46818 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || ||||| || |||||| ||| | | ||| | || || | | |||||| Sbjct 46817 ATGCCCTCTTTATCTTGGATTTTGGCTTTCACATTTTCGATTGTATCTGATGGTTCCACC 46758 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||||||||||| ||||| || || |||||||| Sbjct 46757 TCTAGGGTGATGGTTTTACCAGTCAATGTTTTCACGAAGATCTGCAT 46711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496251655919040