Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1524 143 2e-29 seq1282 141 7e-29 seq314 141 7e-29 seq981 107 1e-18 >seq1524 Length=218836 Score = 143 bits (158), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || ||||| ||||| ||||| || || || |||||||||||| || ||| || | | Sbjct 93 AATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCG--GACAATGTACGTCCAT 150 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| | ||| || |||||| | ||||||||||| || || ||||| |||||||||| Sbjct 151 CTTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGT 210 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | || ||| || || |||| || ||||| | |||||| ||||| ||||||| Sbjct 211 CTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGG 270 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||| |||| |||||| ||||| ||||||||| Sbjct 271 TTTTACCAGTCAAAGTTTTGACAAATATTTGCATA 305 >seq1282 Length=29674 Score = 141 bits (156), Expect = 7e-29 Identities = 162/216 (75%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CG 15021 ||| |||||||| || || || |||||||| |||||||| || || ||| || | Sbjct 28807 TAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCA--GATAATGTACGACCA 28864 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| | |||||| ||||| | |||||||| || || || |||||| ||||||||| Sbjct 28865 TCTTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTG 28924 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || || ||| || ||| |||| || ||||| | |||||| ||||| |||||| Sbjct 28925 TCTTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATG 28984 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || |||| |||||| || |||||||||||| Sbjct 28985 GTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29020 Score = 122 bits (134), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || |||||||| || ||||| || ||||| |||||||| || || ||| || | | Sbjct 29036 AATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCA--GACAATGTACGTCCAT 29093 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| | ||| |||||||| | || ||||| || || || ||||| |||||||||| Sbjct 29094 CTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTGT 29153 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | || ||| || || |||| || ||||| | ||| || ||||| ||||||| Sbjct 29154 CTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATGG 29213 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| || |||| |||||| || |||||||||||| Sbjct 29214 TTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29248 Score = 122 bits (134), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || |||||||| || ||||| || ||||| |||||||| || || ||| || | | Sbjct 29264 AATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCA--GACAATGTACGTCCAT 29321 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| | ||| |||||||| | || ||||| || || || ||||| |||||||||| Sbjct 29322 CTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTGT 29381 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | || ||| || || |||| || ||||| | ||| || ||||| ||||||| Sbjct 29382 CTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATGG 29441 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| || |||| |||||| || |||||||||||| Sbjct 29442 TTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29476 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 ||| |||| ||| | | || ||||| || ||||| || || || || || ||||| Sbjct 28564 GCCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATCC-- 28621 Query 15009 GAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 || ||| || | || || | |||||| ||||| | || ||||| ||||| || Sbjct 28622 GATAATGTGCGTCCATCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGA 28681 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 ||||| ||||||||||| || ||| ||| || |||| || ||||| || Sbjct 28682 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCTCG 28741 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||| ||||| |||| ||||| || || || |||||| Sbjct 28742 ACTTCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCATA 28792 >seq314 Length=315434 Score = 141 bits (156), Expect = 7e-29 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || || || |||||||||||||| || ||||| |||||||| || || Sbjct 276262 CCACCACGAAGTCGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTC--TG 276205 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| |||||||| || || | |||||||| ||||| || || Sbjct 276204 ATAAGGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTG 276145 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| || || ||| ||| |||||| |||| ||||||||| ||| | Sbjct 276144 GAATGCCTTCTTTATCTTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAA 276085 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||||||||||||||| || ||||| || ||||| || ||||| Sbjct 276084 CTTCGAGGGTAATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCAT 276036 >seq981 Length=59034 Score = 107 bits (118), Expect = 1e-18 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || || |||||||| || || || || || ||||| ||| || || || | | Sbjct 46922 AACACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCG--GACAACGTACGGCCAT 46865 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| ||||| || |||||| | |||||||| ||||| || |||||| || || || | Sbjct 46864 CTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCTTTAT 46805 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | |||||| ||| ||| |||| || ||||| ||| || |||| ||| |||| Sbjct 46804 CTTGGATTTTGGCTTTCACATTTTCGATTGTATCTGATGGTTCCACCTCTAGGGTGATGG 46745 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||||||| |||| ||||| || || || ||||| || Sbjct 46744 TTTTACCAGTCAATGTTTTCACGAAGATCTGCATCTT 46708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357384455901620