Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1282 127 5e-24 seq1524 89.7 1e-12 >seq1282 Length=29674 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | |||||||| ||||||||||||| ||||||||||| ||| || Sbjct 29027 CGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTA 29086 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||| || ||||| || || ||||| | ||| ||||| || || ||| ||| Sbjct 29087 CGTCCATCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCT 29146 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| ||| | ||| || | | ||| || || || Sbjct 29147 TCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAA 29206 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || | |||||| || |||||||| Sbjct 29207 GTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTG 29244 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | |||||||| ||||||||||||| ||||||||||| ||| || Sbjct 29255 CGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTA 29314 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||| || ||||| || || ||||| | ||| ||||| || || ||| ||| Sbjct 29315 CGTCCATCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCT 29374 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| ||| | ||| || | | ||| || || || Sbjct 29375 TCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAA 29434 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || | |||||| || |||||||| Sbjct 29435 GTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTG 29472 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || |||||||| || ||||||| ||||||||||| || || | |||||||| || || Sbjct 28817 TGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGATAATGTACGACCATCTTCAAGTTGT 28876 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || || || | ||| ||||| || || ||| ||||| || || ||||| Sbjct 28877 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGGATCTTG 28936 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||| | ||| || | | |||||| || || || || || || || || Sbjct 28937 GCCTTAACATTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGTTTTTCCAGTC 28996 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | |||||| || |||||||| Sbjct 28997 AAAGTTTTGACGAAAATTTG 29016 >seq1524 Length=218836 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || ||||| || ||||| | ||||||||| | || ||| ||||||||||| ||||||| Sbjct 175 ATTTTCGCTGGTAAGCAACTTGAAGATGGACGTACATTGTCCGATTACAACATCCAGAAG 116 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||||||||||||| | || ||| | ||||| Sbjct 115 GAGTCTACTCTTCACTTAGTATTGCGTCTTCG 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178895438256044