Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1361 161 1e-34 seq1282 109 5e-19 seq314 95.1 1e-14 seq981 89.7 5e-13 >seq1361 Length=478162 Score = 161 bits (178), Expect = 1e-34 Identities = 203/274 (74%), Gaps = 6/274 (2%) Strand=Plus/Minus Query 132870 TTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGA 132929 ||| ||||||||||||||||| || ||||||||||| ||||| || || || || | || Sbjct 112990 TTGTACCAAATGCTTGAACATTAAACAAGCAAAGTCACAATGTAAACCTTCATCGCGTGA 112931 Query 132930 AATGAGTTCGTTGCTGAAA--GTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAAT 132987 ||| | |||||| ||||| |||| || ||||| | ||| ||||| || ||||||||| Sbjct 112930 AATTAATTCGTT--TGAAAAGGTCAGTCCCGGCATTAAGCCACGTTTCTTTAGCCAAAAT 112873 Query 132988 ATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGC 133047 || | || |||||||| || || | || || || ||||| || || | | || Sbjct 112872 ATTGATGCAAAACTGCCACTGAAAAATATACCTTCAACAGCCGCAAATGCAATTATACGT 112813 Query 133048 TCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT-TTCTTT 133106 || ||||| || ||| ||| || | ||||| || |||||| || ||||| |||||| Sbjct 112812 TCACCGAATGTTGCTGTTTTACTTGATATCCAATTCAACGCCCAGTCTGCCTTCTTCTTT 112753 Query 133107 GACGCACGGCATCGTTTCGATGGCGTTCAACAAA 133140 ||||||||||| ||||| || || || || ||| Sbjct 112752 -ACGCACGGCATTGTTTCAATTGCATTAAATAAA 112720 >seq1282 Length=29674 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || || || ||||| || | || |||||| | | Sbjct 28791 ATGCAGATCTTCGTCAAAACCTTGACTGGTAAGACCATTACTTTGGAAGTCGAGCCATCA 28732 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | ||||| |||||| || |||| ||||| || || ||||| | || || Sbjct 28731 GATACCATTGAAAACG-TTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCA 28673 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| || || ||||| || || || | ||||| | || || || Sbjct 28672 ACAACGTTTAATTTTTGCTGGTAAACAACTTGAGGATGGACGCACATTATCGGATTATAA 28613 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || |||||||| || ||||||||||||||| Sbjct 28612 TATCCAGAAGGAATCTACACTCCATTTGGTCCTTCGTTTGAGAGGCGGC 28564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || |||||||| || | || || || | | Sbjct 29019 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTAGAACCTTCT 28960 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| |||| | || |||| ||||| || || ||||| | || || Sbjct 28959 GATACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGATCAG 28900 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| || || ||||| || || || | || || | ||||||||| Sbjct 28899 CAACGTTTGATTTTTGCTGGTAAACAACTTGAAGATGGTCGTACATTATCTGACTACAAC 28840 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||||| ||| |||| |||||||| || Sbjct 28839 ATCCAAAAAGAATCGACTCTGCATTTAGT 28811 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || |||||||| || | || || || | | Sbjct 29247 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29188 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | ||||| |||| | || |||| ||||| || || |||||| | || || Sbjct 29187 GATACCATTGAAAACG-TTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCA 29129 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | || ||||| || || || || | || || | |||||||| Sbjct 29128 GCAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAA 29069 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || ||||| || ||||| Sbjct 29068 CATCCAAAAGGAGTCTACTCTCCATTTAGTATTGCGT 29032 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || |||||||| || | || || || | | Sbjct 29475 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29416 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | ||||| |||| | || |||| ||||| || || |||||| | || || Sbjct 29415 GATACCATTGAAAACG-TTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCA 29357 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | || ||||| || || || || | || || | |||||||| Sbjct 29356 GCAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAA 29297 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || ||||| || ||||| Sbjct 29296 CATCCAAAAGGAGTCTACTCTCCATTTAGTATTGCGT 29260 >seq314 Length=315434 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || ||||| |||||||| ||| |||| || || | || Sbjct 276036 ATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATTACCCTCGAAGTTGAACCATCC 276095 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | || | || || | || ||||| || ||||| | || ||| Sbjct 276096 GATACTATCGAAAATGTAAAGGCCAAGATTCAAGATAAAGAAGGCATTCCACCAGATCAA 276155 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || ||||| |||| || | |||||| | ||||||||| Sbjct 276156 CAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACCTTATCAGACTACAAC 276215 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||| | || || ||||||||| |||| Sbjct 276216 ATCCAAAAGGAATCTACCCTTCATTTGGTGTTGCG 276250 >seq981 Length=59034 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| | || || |||||||||||| | || || || | Sbjct 46708 AAGATGCAGATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTAGAGGTGGAACCA 46767 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| | |||| ||||||| || |||||||| ||||| | || Sbjct 46768 TCAGATACAATCGAAAATGTGAAAGCCAAAATCCAAGATAAAGAGGGCATTCCACCAGAT 46827 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | || | ||| || || || |||| || | || || | ||||||| Sbjct 46828 CAACAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCCGTACGTTGTCCGACTAC 46887 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||| ||||| | || || || |||||| ||||| Sbjct 46888 AATATCCAGAAGGAGTCAACCCTTCACTTGGTGTTGCGT 46926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500161971258880