Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1524 154 3e-32 seq1282 145 2e-29 seq314 118 2e-21 >seq1524 Length=218836 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||||||||| ||||| || || || |||||||||| | || | ||||| Sbjct 92 CAATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGACAATGTACGTCCATC 151 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| || |||||||| ||||| || | || || || ||||||||||| ||||| ||||| Sbjct 152 TTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGTC 211 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || ||| ||||| |||||||| || ||| ||| ||||| | |||| || Sbjct 212 TTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGT 271 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||||||||| || || | |||||| Sbjct 272 TTTACCAGTCAAAGTTTTGACAAATATTTGCAT 304 >seq1282 Length=29674 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| ||||| ||||| || ||||| || | | || | |||||||| || ||| Sbjct 29045 TGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTACGTCCATCTTCAAGTTGC 29104 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | ||||| || ||||| ||||| ||||| |||||||| || || Sbjct 29105 TTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTG 29164 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||| |||||||| || ||| ||| ||||| | |||| || ||||| ||| Sbjct 29165 GCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATGGTTTTTCCAGTC 29224 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 |||||||| ||||| | |||||| Sbjct 29225 AAAGTTTTGACGAAAATTTGCAT 29247 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| ||||| ||||| || ||||| || | | || | |||||||| || ||| Sbjct 29273 TGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTACGTCCATCTTCAAGTTGC 29332 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | ||||| || ||||| ||||| ||||| |||||||| || || Sbjct 29333 TTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTG 29392 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||| |||||||| || ||| ||| ||||| | |||| || ||||| ||| Sbjct 29393 GCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATGGTTTTTCCAGTC 29452 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 |||||||| ||||| | |||||| Sbjct 29453 AAAGTTTTGACGAAAATTTGCAT 29475 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| || |||||||| || ||||| || | | || | |||||||| || || Sbjct 28817 TGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGATAATGTACGACCATCTTCAAGTTGT 28876 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || | ||||| || ||||| ||||| ||||| |||||||| || || Sbjct 28877 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGGATCTTG 28936 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || |||||||| || ||| ||| ||||| | |||| || ||||| ||| Sbjct 28937 GCCTTAACATTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGTTTTTCCAGTC 28996 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 |||||||| ||||| | |||||| Sbjct 28997 AAAGTTTTGACGAAAATTTGCAT 29019 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || || || || ||||| ||||| | | || | ||||| || || || Sbjct 28589 TGGAGTGTAGATTCCTTCTGGATATTATAATCCGATAATGTGCGTCCATCCTCAAGTTGT 28648 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || | |||||||| ||||||||||||||||| ||||| || || || Sbjct 28649 TTACCAGCAAAAATTAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTG 28708 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || ||||| |||||||| || || || ||||| | |||| ||||| || ||| Sbjct 28709 GCTTTAACGTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGTCTTACCAGTC 28768 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| | ||||| Sbjct 28769 AAGGTTTTGACGAAGATCTGCAT 28791 >seq314 Length=315434 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| || | ||||| || || || ||||| || ||||| || | | || | Sbjct 276253 AGTCGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGTGCGA 276194 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | || ||||| || ||||| | |||||||| ||||| |||||||||||| Sbjct 276193 CCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCT 276134 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || |||||||| || ||| || || || || || || || ||| ||||| |||||| Sbjct 276133 TTATCTTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTA 276074 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||| || || || | ||||| Sbjct 276073 ATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCAT 276036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109456979216444