Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq1524 154 3e-32
seq1282 145 2e-29
seq314 118 2e-21
>seq1524
Length=218836
Score = 154 bits (170), Expect = 3e-32
Identities = 162/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
||| || | ||||||||| ||||| || || || |||||||||| | || | |||||
Sbjct 92 CAATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGACAATGTACGTCCATC 151
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
||| || |||||||| ||||| || | || || || ||||||||||| ||||| |||||
Sbjct 152 TTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGTC 211
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
||| || || ||| ||||| |||||||| || ||| ||| ||||| | |||| ||
Sbjct 212 TTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGT 271
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || ||||||||||| || || | ||||||
Sbjct 272 TTTACCAGTCAAAGTTTTGACAAATATTTGCAT 304
>seq1282
Length=29674
Score = 145 bits (160), Expect = 2e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| ||||| ||||| ||||| || ||||| || | | || | |||||||| || |||
Sbjct 29045 TGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTACGTCCATCTTCAAGTTGC 29104
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || ||||| | ||||| || ||||| ||||| ||||| |||||||| || ||
Sbjct 29105 TTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTG 29164
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| ||||| |||||||| || ||| ||| ||||| | |||| || ||||| |||
Sbjct 29165 GCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATGGTTTTTCCAGTC 29224
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
|||||||| ||||| | ||||||
Sbjct 29225 AAAGTTTTGACGAAAATTTGCAT 29247
Score = 145 bits (160), Expect = 2e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| ||||| ||||| ||||| || ||||| || | | || | |||||||| || |||
Sbjct 29273 TGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTACGTCCATCTTCAAGTTGC 29332
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || ||||| | ||||| || ||||| ||||| ||||| |||||||| || ||
Sbjct 29333 TTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTG 29392
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| ||||| |||||||| || ||| ||| ||||| | |||| || ||||| |||
Sbjct 29393 GCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATGGTTTTTCCAGTC 29452
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
|||||||| ||||| | ||||||
Sbjct 29453 AAAGTTTTGACGAAAATTTGCAT 29475
Score = 136 bits (150), Expect = 9e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| ||||| || |||||||| || ||||| || | | || | |||||||| || ||
Sbjct 28817 TGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGATAATGTACGACCATCTTCAAGTTGT 28876
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
||||| || || || | ||||| || ||||| ||||| ||||| |||||||| || ||
Sbjct 28877 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGGATCTTG 28936
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| || || |||||||| || ||| ||| ||||| | |||| || ||||| |||
Sbjct 28937 GCCTTAACATTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGTTTTTCCAGTC 28996
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
|||||||| ||||| | ||||||
Sbjct 28997 AAAGTTTTGACGAAAATTTGCAT 29019
Score = 114 bits (126), Expect = 3e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || || || || || || ||||| ||||| | | || | ||||| || || ||
Sbjct 28589 TGGAGTGTAGATTCCTTCTGGATATTATAATCCGATAATGTGCGTCCATCCTCAAGTTGT 28648
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
||||| || || || | |||||||| ||||||||||||||||| ||||| || || ||
Sbjct 28649 TTACCAGCAAAAATTAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTG 28708
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| ||||| |||||||| || || || ||||| | |||| ||||| || |||
Sbjct 28709 GCTTTAACGTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGTCTTACCAGTC 28768
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
|| ||||| ||||| | |||||
Sbjct 28769 AAGGTTTTGACGAAGATCTGCAT 28791
>seq314
Length=315434
Score = 118 bits (130), Expect = 2e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||| ||| || | ||||| || || || ||||| || ||||| || | | || |
Sbjct 276253 AGTCGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGTGCGA 276194
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| | || ||||| || ||||| | |||||||| ||||| ||||||||||||
Sbjct 276193 CCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCT 276134
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| |||||||| || ||| || || || || || || || ||| ||||| ||||||
Sbjct 276133 TTATCTTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTA 276074
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || || || || | ||| || || || | |||||
Sbjct 276073 ATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCAT 276036
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109456979216444
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |