Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_017984.1
Length=46387
Score E
Sequences producing significant alignments: (Bits) Value
seq50 100 8e-17
seq1240 98.7 3e-16
>seq50
Length=8007
Score = 100 bits (110), Expect = 8e-17
Identities = 164/233 (70%), Gaps = 9/233 (4%)
Strand=Plus/Minus
Query 45459 ACTCTTGCAGAGCGTCAAAAAACCTATGGGTGTTTTGAAGATGTAGCTACGGTTACAGAG 45518
|| || |||||||||||| || || ||| |||||| ||||| ||| || || |||
Sbjct 1472 ACCCTAGCAGAGCGTCAATCCACTTACGGGAATTTTGAGGATGTTGCTTTTGTGACTGAG 1413
Query 45519 GAAATTAT-TAAATCATT--AAAAAT---AGGCAATTAC---GACAACATGCCAAAACCC 45569
| ||||| | || || |||| | || ||| | || | ||||||| |
Sbjct 1412 AACATTATGTCCATTCTTGCAAAAGTTAGAGTGAATGGCCTTGATGATTTGCCAAATACT 1353
Query 45570 CACAAGATGGCTATGTATATGATTGCTTCAAAAATGGCTCGTCTTGTTAACGGCGATCAC 45629
||| ||||| | || |||||||| || |||||||| ||| | || ||||| |||
Sbjct 1352 CACCGCATGGCGTTATACATGATTGCATCTAAAATGGCGCGTATCGTGAACGGTGATTTT 1293
Query 45630 AATCATCTTGATAGCTGGCATGACATTGGTGGGTATGCGAAGTTAATTGAAAA 45682
|| ||||||||| |||||||||||||| || ||| | ||| ||||||||||
Sbjct 1292 AACCATCTTGATTCTTGGCATGACATTGGCGGCTATTCAAAGCTAATTGAAAA 1240
>seq1240
Length=38001
Score = 98.7 bits (108), Expect = 3e-16
Identities = 124/161 (77%), Gaps = 12/161 (7%)
Strand=Plus/Plus
Query 8485 TGGTATTATTTGATTATTGATCG--AATCTGTGGGCGACACAAGCCA-AT--AAG-ACCA 8538
||||| |||| |||||||| | ||||||||||||||||| | || ||| || |
Sbjct 2261 TGGTAATATTCTCTTATTGATTGTGAATCTGTGGGCGACACAGGTAGTATCGAAGTACAA 2320
Query 8539 GATAGACAG-GTCAG-GTATGCAACTATTCGCACGTTGCCGATTAATAATTTTA---ATT 8593
|| | ||| | || | |||||||||||||||||||||| || ||||| | | | |
Sbjct 2321 GAGAAGCAGAGCCACTGCATGCAACTATTCGCACGTTGCCAATCAATAAAATAAGCAAGT 2380
Query 8594 A-ATTGTATATAGCTTGGGGCATGCAATCCCGATTGATGTT 8633
| |||| | ||||||||||||||| ||||||||||||||||
Sbjct 2381 AGATTGCAGATAGCTTGGGGCATGAAATCCCGATTGATGTT 2421
Score = 98.7 bits (108), Expect = 3e-16
Identities = 285/435 (66%), Gaps = 4/435 (1%)
Strand=Plus/Plus
Query 34761 TTGCTTCTGTTTTTGCATTAGTAGCAAATCCATTGTTGTCATCATCTGCTGTAGTTGCAA 34820
|||||| || || ||||| ||||| |||||||| ||||| | || || | |
Sbjct 33192 TTGCTT--GTCTTAGCATTCACCGCAAAGCCATTGTTACAGTCATCGCCAGTGGTGGTGA 33249
Query 34821 TATTTAGCACACCACAAAGCGTATAACGCTTACCGTAACTAATAGCCGCACCTATGGCTT 34880
| || | | ||| || |||||||| ||||| ||||| | || || ||||| || || |
Sbjct 33250 TGTTCAATATACCGCATAGCGTATAGCGCTTGCCGTATGTGATTGCTGCACCGATAGCCT 33309
Query 34881 GAATACCATTCATGCCTTTTGTGGCTGCATCTGTAGGCAAGATAAGATT-GTTTTCGATC 34939
| || ||||||||||| ||| | || || || ||||| ||| | || ||| |
Sbjct 33310 GCATCTTGTTCATGCCTTTGGTGACGGCTTCGGTTGGCAATTCAAGCTCAGTGGTCGCTG 33369
Query 34940 ATATGCCCAGCTTTATGACGCAATTGGCAAGTCACCTCAACAAATCCTTTTTCAACTTGC 34999
|||| || |||| || || | ||| | || || | | | | |||
Sbjct 33370 -TATGGCCGTCTTTGTGCATCAGTGTGCAGACAATCTTTACCGACTCAATGCCGTTCTGC 33428
Query 35000 GAATTTTTAAAAGAAACACTAAAGCCATATTTAGACAATATTGGGCGAACAATGTTTACA 35059
| | | || || || |||||||||| | || | || || | || || ||||||
Sbjct 33429 TGAGTGCTGAATGACACGCTAAAGCCATGCTCGGATAGAATCGGCTGCACGATTTTTACA 33488
Query 35060 ATATCTTCCAATGGCGTATATGTTGTGCTATATGATTTTTTAGTATGAGCAATTACGGGT 35119
||||| || ||||| | ||||||||||| || ||| || ||||| ||||| || ||
Sbjct 33489 ATATCCTCTAATGGTGCGTATGTTGTGCTGTAGCTTTTCTTTGTATGCGCAATCACTGGA 33548
Query 35120 ATTTCTTTGCTCATTTCTGCAAAGTCATTGTTAAAATCAATTACAGCTTGTTGCGCCATA 35179
|| | ||| |||| | ||||| | ||||| | || | ||||| ||| |||
Sbjct 33549 ATCTTTTTAGACATTAAAGAGAAGTCGTGATTAAAGTTGATAATCGCTTGCTGCTTCATG 33608
Query 35180 ACTTCTTTTTGCATT 35194
| ||||||||||||
Sbjct 33609 ATGTCTTTTTGCATT 33623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148313749494216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |