Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq314 109 4e-19 seq865 107 1e-18 seq981 100 2e-16 seq1282 89.7 4e-13 >seq314 Length=315434 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||||||| || || || ||||| || ||||| || |||| | ||| Sbjct 276253 AGTCGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGTGCGA 276194 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || ||||||||||| |||| || |||||||| | |||| ||| || Sbjct 276193 CCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCT 276134 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| |||||| | | || || || | || || || | ||| Sbjct 276133 TTATCTTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTA 276074 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| | ||| || ||||| |||||||| Sbjct 276073 ATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCAT 276036 >seq865 Length=388304 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 ||||| |||||| ||||||| || ||||||||||| | ||| ||||| ||| || Sbjct 356779 GGATAGAAGATTCGTTCACAGATCAATTGAGCAATACGGTCACCCTTTGCCACCTTGAAC 356838 Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186 || ||||| || ||||| | | |||| | | || | ||| |||||||||| Sbjct 356839 TCGACATCGGAGTGGTTGAATAAGATTACTCGAATATCGCCACGGTAGTCCTCATCGACA 356898 Query 9187 ACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGA 9246 ||||| ||||| || || ||| | | ||| | || || ||||| || ||||| |||||| Sbjct 356899 ACACCGGCACCAACATCAATGGAATATTTGGCAGCCAGACCAGACCGAGGCGCAATTCGA 356958 Query 9247 CCGTAGCATCCCACCGG 9263 ||||| ||||| || || Sbjct 356959 CCGTAACATCCAACTGG 356975 >seq981 Length=59034 Score = 100 bits (110), Expect = 2e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| || || |||||||| || || | | || Sbjct 46928 AGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCGGACAACGTACGG 46869 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| |||||||| || || |||| || |||||||| | |||| |||||| Sbjct 46868 CCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCT 46809 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || || || ||| ||| | | | ||||| | |||||||| | || Sbjct 46808 TTATCTTGGATTTTGGCTTTCACATTTTCGATTGTATCTGATGGTTCCACCTCTAGGGTG 46749 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGT 48773 || ||||| || ||||| ||||| || || ||||||||| || || Sbjct 46748 ATGGTTTTACCAGTCAATGTTTTCACGAAGATCTGCATCTTGAGT 46704 >seq1282 Length=29674 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || || || ||||| || || |||||||| || ||||| |||||| Sbjct 28793 CCTCCACGTAGACGTAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGAT 28852 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || || | || ||||| ||||| |||| || || ||||| | ||| Sbjct 28853 AATGTACGACCATCTTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGA 28912 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||||| || ||| | | | || || | || || Sbjct 28913 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCTACT 28972 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| |||||||| ||||||||||| || ||||| ||||| Sbjct 28973 TCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380929558883436