Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq314 141 2e-28 seq1282 134 2e-26 seq1524 113 8e-20 seq981 113 8e-20 >seq314 Length=315434 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | ||| | |||| ||| | |||| || || || || ||||| || Sbjct 276263 ACCACCACGAAGTCGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGA 276204 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| || | | ||| || |||||||| |||||||| || || | |||||||| || || Sbjct 276203 TAAGGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGG 276144 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || |||||||||||||| || |||| |||| |||| ||||||||||| | ||||| Sbjct 276143 AATGCCTTCTTTATCTTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAAC 276084 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || || |||||||| || || || || ||||| || ||||| Sbjct 276083 TTCGAGGGTAATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCAT 276036 >seq1282 Length=29674 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || |||||||| ||||| |||| ||| | ||||| || || |||||||| || ||| Sbjct 28565 CCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATCCGAT 28624 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || | ||| || | |||||| || ||||||||||| | |||||||| ||||| Sbjct 28625 AATGTGCGTCCATCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGAGGA 28684 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||| || || || || |||| ||| | ||| ||| ||||| || | ||| ||| Sbjct 28685 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCTCGACT 28744 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | ||| || || ||||| || | ||||| || || || ||||| Sbjct 28745 TCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 28791 >seq1524 Length=218836 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || || ||||| || || | ||| || | ||| || || || ||||| || | | Sbjct 123 ATGTTGTAATCGGACAATGTACGTCCATCTTCAAGTTGCTTACCAGCGAAAATCAAACGC 182 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| ||||| || ||||| || ||||| || |||| || | ||| ||| ||| Sbjct 183 TGCTGATCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTA 242 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| || ||||||| ||| || |||||||| || | ||||| |||||||||||| Sbjct 243 TCAGAAGGTTCTACTTCTAAAGTAATGGTTTTACCAGTCAAAGTTTTGACAAATATTTGC 302 Query 193359 AT 193360 || Sbjct 303 AT 304 >seq981 Length=59034 Score = 113 bits (124), Expect = 8e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| |||||||| ||||| | ||| || ||||| || || || || || || | Sbjct 46892 ATATTGTAGTCGGACAACGTACGGCCATCTTCCAATTGCTTACCAGCGAAGATCAAACGT 46833 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| || || || || ||||||||||| ||||||| ||| | |||| || ||| Sbjct 46832 TGTTGATCTGGTGGAATGCCCTCTTTATCTTGGATTTTGGCTTTCACATTTTCGATTGTA 46773 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | || || ||||| || || |||||||| || | ||||| || || || ||| Sbjct 46772 TCTGATGGTTCCACCTCTAGGGTGATGGTTTTACCAGTCAATGTTTTCACGAAGATCTGC 46713 Query 193359 ATTTT 193363 || || Sbjct 46712 ATCTT 46708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899634922482240