Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1361 188 1e-42 seq1524 140 5e-28 seq1282 136 6e-27 seq981 122 1e-22 seq314 111 2e-19 seq1657 91.5 2e-13 >seq1361 Length=478162 Score = 188 bits (208), Expect = 1e-42 Identities = 370/542 (68%), Gaps = 7/542 (1%) Strand=Plus/Minus Query 17870 TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATA 17929 ||||| || ||||| || || |||||||| || || ||||| ||||||||| | |||| Sbjct 113250 TATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCTTCTAATGATATTTGTTCCATA 113191 Query 17930 AAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATT-AATTCGTATAATAATCT 17988 || ||||||||| || | ||||| |||||| || ||||| | || | Sbjct 113190 AATGGAAATGGATTTGTCGAATTATA-TATTTTCTCAATACCCAATTCACCAAGCAAACG 113132 Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAG-TCTGA 18047 ||||||||||||||| | ||||||||||| |||| ||||||||||||| | ||| | Sbjct 113131 ATCTGCTACAAATTCTATGTATTGTGACATTAAATTACAATTCATACCTAACAAATCT-A 113073 Query 18048 AAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTA 18107 |||||| | || | | |||||||| ||||| | ||| | ||| ||||| | || Sbjct 113072 CAGGTAGTGACTCTGTTAAAAATTCTTGTTCTATTTTAACGGCGTCTCGGATTATTTCTA 113013 Query 18108 TTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAAT 18167 || | |||| ||| | | | || || || || |||||| ||||| | Sbjct 113012 CAACACAGTCCTTTGTTGGTTTTTGTACCAAATGCTTG-AACAT--TAAACAAGCAAAGT 112956 Query 18168 CAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTA 18227 || |||||||||||||| | || ||||||||||| ||| || | || ||||||| Sbjct 112955 CACAATGTAAACCTTCATCGCGTGAAATTAATTCGTTTGAAAAGGTCAGTCCCGGCATTA 112896 Query 18228 TACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAA 18287 || | ||| |||||||||||||| ||||| ||||| | | || |||||||| |||| Sbjct 112895 AGCCACGTTTCTTTAGCCAAAATATTGATGCAAAACTGCCACTGAAAAATATACCTTCAA 112836 Query 18288 CGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCATTTTT 18347 | ||| || || |||| | |||| | || | | | || || |||||| || Sbjct 112835 CAGCCGCAAATGCAATTATACGTTCACCGAATGTTGCTGTTTTACTTGATATCCAATTCA 112776 Query 18348 GTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCAT 18407 ||||| ||| | | | ||||| || | || || |||||||| |||| || Sbjct 112775 ACGCCCAGTCTGCCTTCTTCTTTACGCACGGCATTGTTTCAATTGCATTAAATAAATAAT 112716 Query 18408 CT 18409 || Sbjct 112715 CT 112714 >seq1524 Length=218836 Score = 140 bits (154), Expect = 5e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| |||||||| ||||| ||||| |||||||| ||| |||| Sbjct 304 ATGCAAATATTTGTCAAAACTTTGACTGGTAAAACCATTACTTTAGAAGTAGAACCTTCT 245 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| || || || ||||| || ||||| || |||||||| || Sbjct 244 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAG 185 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| || |||||||| || |||||| | || || || ||||| || Sbjct 184 CAGCGTTTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGTACATTGTCCGATTACAAC 125 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || ||||| ||||| || Sbjct 124 ATCCAGAAGGAGTCTACTCTTCACTTAGTATT 93 >seq1282 Length=29674 Score = 136 bits (150), Expect = 6e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| |||||||||||||| ||||| |||||||| ||| |||| Sbjct 29019 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTAGAACCTTCT 28960 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || || || || ||||| || ||||| || || ||||| || Sbjct 28959 GATACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGATCAG 28900 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| ||| ||||| || || |||||| | || ||||| || || || Sbjct 28899 CAACGTTTGATTTTTGCTGGTAAACAACTTGAAGATGGTCGTACATTATCTGACTACAAC 28840 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| |||| || |||||||| ||| Sbjct 28839 ATCCAAAAAGAATCGACTCTGCATTTAGTATTA 28807 Score = 123 bits (136), Expect = 4e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| |||||||||||||| ||||| |||||||| ||| |||| Sbjct 29247 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29188 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| || || || ||||| || ||||| || || ||||| || Sbjct 29187 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 29128 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | ||| || ||||| || |||||| | || || || || || | Sbjct 29127 CAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACA-- 29070 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 | ||||||| ||| | || || |||||||| || Sbjct 29069 ACATCCAAAAGGAGTCTACTCTCCATTTAGTATT 29036 Score = 123 bits (136), Expect = 4e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| |||||||||||||| ||||| |||||||| ||| |||| Sbjct 29475 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29416 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| || || || ||||| || ||||| || || ||||| || Sbjct 29415 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 29356 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | ||| || ||||| || |||||| | || || || || || | Sbjct 29355 CAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACA-- 29298 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 | ||||||| ||| | || || |||||||| || Sbjct 29297 ACATCCAAAAGGAGTCTACTCTCCATTTAGTATT 29264 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| |||||||| || || ||||| || |||||||| || Sbjct 28791 ATGCAGATCTTCGTCAAAACCTTGACTGGTAAGACCATTACTTTGGAAGTCGAGCCATCA 28732 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| ||| || || || || || |||||||| |||||||| ||| Sbjct 28731 GATACCATTGAAAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAA 28672 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || |||| ||| ||||| || || || ||| | || ||||| ||||||||| Sbjct 28671 CAACGTTTAATTTTTGCTGGTAAACAACTTGAGGATGGACGCACATTATCGGATTATAAT 28612 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || || | || || ||||| || | | || |||||||| Sbjct 28611 ATCCAGAAGGAATCTACACTCCATTTGGTCCTTCGTTTGAGAGGCGG 28565 >seq981 Length=59034 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | |||||||||||||| ||||| || || |||| || ||| Sbjct 46708 AAGATGCAGATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTAGAGGTGGAACCA 46767 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| || ||| |||||| ||||| ||||||||||| ||||| || ||||| Sbjct 46768 TCAGATACAATCGAAAATGTGAAAGCCAAAATCCAAGATAAAGAGGGCATTCCACCAGAT 46827 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | ||||| | || |||||||| | |||||| | | || || || || || Sbjct 46828 CAACAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCCGTACGTTGTCCGACTAC 46887 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||||| || ||| | || ||||| || ||||| Sbjct 46888 AATATCCAGAAGGAGTCAACCCTTCACTTGGTGTT 46922 >seq314 Length=315434 Score = 111 bits (122), Expect = 2e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || ||||| ||||| | ||||| ||| || Sbjct 276036 ATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATTACCCTCGAAGTTGAACCATCC 276095 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || || || || ||||||||||||||||| || ||||| ||| Sbjct 276096 GATACTATCGAAAATGTAAAGGCCAAGATTCAAGATAAAGAAGGCATTCCACCAGATCAA 276155 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||||||||| || | |||||| | || |||||||| || | Sbjct 276156 CAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACCTTATCAGACTACA-- 276213 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 | ||||||| || | || |||||||| ||||| Sbjct 276214 ACATCCAAAAGGAATCTACCCTTCATTTGGTGTT 276247 >seq1657 Length=82118 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || |||||||||||||||| |||||||| || | || || || Sbjct 81986 AAGATGCAGATCTTCGTTAAAACATTGACTGGCAAAACTATCACCCTGGAGGTTGAGCCA 82045 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| ||| |||||| ||||| |||||||| ||||| || || ||||| Sbjct 82046 TCCGATACGATTGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGAATCCCACCAGAC 82105 Query 155940 CAACAAAGATTGA 155952 |||||| | |||| Sbjct 82106 CAACAACGTTTGA 82118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731856154971200