Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1361 201 2e-46 seq981 165 2e-35 seq1524 163 6e-35 seq1282 158 2e-33 seq314 154 3e-32 >seq1361 Length=478162 Score = 201 bits (222), Expect = 2e-46 Identities = 347/498 (70%), Gaps = 7/498 (1%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 |||||||||||||| | |||||| |||||||||| | | |||||| |||||| ||| Sbjct 113213 CTTCTAATGATATTTGTTCCATAAATGGAAATGGATTTGTCGAATTATA-TATTTT-CTC 113156 Query 49633 C-TATC-AATACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTC 49690 || | ||| || | || | ||| ||||||||||| | |||||||||||||| | Sbjct 113155 AATACCCAATTCACCAAGCAAACGATCTGCTACAAATTCTATGTATTGTGACATTAAATT 113096 Query 49691 ACAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttc 49750 |||||||||||| || || | | |||| || || | |||||||| |||||||| Sbjct 113095 ACAATTCATACCTAACAAATCTACAGGTAGTGACTCTGTTAAAAATTCTTGTTCTATTTT 113036 Query 49751 tacagcttgtttaattatcataattatattattttttgataatttatatttaatatgatt 49810 || || | | ||||| | | | | |||| | ||| | | | ||| || Sbjct 113035 AACGGCGTCTCGGATTATTTCTACAACACAGTCCTTTGTTGGTTTTTGTACCAAATGCTT 112976 Query 49811 cgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATT 49870 | |||||||| ||||| ||| ||||||||| || || | || || ||||| || Sbjct 112975 GA---ACATTAAACAAGCAAAGTCACAATGTAAACCTTCATCGCGTGAAATTAATTCGTT 112919 Query 49871 ACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACT 49930 ||| || | ||| |||||||| || | || || ||||||||||||||||||||||| Sbjct 112918 TGAAAAGGTCAGTCCCGGCATTAAGCCACGTTTCTTTAGCCAAAATATTGATGCAAAACT 112859 Query 49931 ACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA 49990 | | || |||||||| || ||| ||||||||| ||||| | | | || || || Sbjct 112858 GCCACTGAAAAATATACCTTCAACAGCCGCAAATGCAATTATACGTTCACCGAATGTTGC 112799 Query 49991 TTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATT 50050 | | | | | |||||||||| | ||||| ||||| || || || | | || || | Sbjct 112798 TGTTTTACTTGATATCCAATTCAACGCCCAGTCTGCCTTCTTCTTTACGCACGGCATTGT 112739 Query 50051 TTCTATAGCTTTAAATAA 50068 ||| || || |||||||| Sbjct 112738 TTCAATTGCATTAAATAA 112721 Score = 152 bits (168), Expect = 1e-31 Identities = 228/322 (71%), Gaps = 4/322 (1%) Strand=Plus/Minus Query 50118 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCT 50177 |||||||| ||||||| | ||| ||||| ||||| || ||| || ||| ||||| Sbjct 112610 TACATTTCTGAATGTATATTTTCAATAGCAATTTGGAAGCCATAGAAGCATCTAGCTTCA 112551 Query 50178 GAATACTGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAG 50235 | | || ||||| || || |||||||||||||||| ||| ||||||||||| | Sbjct 112550 GTAACTTGCACTTCCTGGCTAA--ATCGTTCAACTAAATTTTCATTAACAATACCATCGG 112493 Query 50236 ATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTT 50295 ||||||| || ||||| | ||||| | |||||| |||| | ||| || | || | Sbjct 112492 ATGCTGCAAAAAATGCAAGAACGTGTGAGATAAAAAACCTTTCTTGATCGTTCAGTTTCT 112433 Query 50296 CCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGG 50355 |||| | | || | ||||| | ||||||||||| |||||| || |||||| | | Sbjct 112432 GCCAATCCTGTAAGTCATGCGATAAGTTTACTTCTTCTACTGTCCAGAACGATGCTTCAG 112373 Query 50356 ATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTTAG 50415 |||||||||||||| |||| || || || ||| ||||||| ||| | ||| | | Sbjct 112372 CCTTTTTATACATTTGCCATATGTCTTGATATTGAATTGGAAATATAACAAAACGTCTTG 112313 Query 50416 TAtttttttCTAATATCGGTTC 50437 ||| | |||| |||||| Sbjct 112312 GATTATCGCGCAATAGCGGTTC 112291 >seq981 Length=59034 Score = 165 bits (182), Expect = 2e-35 Identities = 181/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| |||||||| | ||||| || || || || | || | ||| || ||||| Sbjct 46948 GTTCAATGATACCACCACGGAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGGATAT 46889 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || || || || || |||| |||||||| |||||||| ||||| || | |||| Sbjct 46888 TGTAGTCGGACAACGTACGGCCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTT 46829 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| ||||| || || ||||||||||| ||||| ||| ||||| || | ||||| Sbjct 46828 GATCTGGTGGAATGCCCTCTTTATCTTGGATTTTGGCTTTCACATTTTCGATTGTATCTG 46769 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | | ||| || ||||| || |||||||||||||| |||||||| | || |||||||| | Sbjct 46768 ATGGTTCCACCTCTAGGGTGATGGTTTTACCAGTCAATGTTTTCACGAAGATCTGCATCT 46709 Query 192539 T 192539 | Sbjct 46708 T 46708 >seq1524 Length=218836 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| |||||||| || | ||||| ||| || ||| || ||||| Sbjct 75 ATACCACCACGAAGACGCAATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCG 134 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| ||| |||| || | ||| |||||||| || || || | ||| ||||| || Sbjct 135 GACAATGTACGTCCATCTTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGA 194 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || || || | ||| || | |||| Sbjct 195 GGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCT 254 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| |||||||||||||||||| || ||||| | |||||| ||||| Sbjct 255 ACTTCTAAAGTAATGGTTTTACCAGTCAAAGTTTTGACAAATATTTGCAT 304 >seq1282 Length=29674 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||||||||||||||| | ||| | ||||| ||| || || ||| Sbjct 28790 ATACCTCCACGTAGACGTAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCA 28849 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| || |||| || | ||||||||||||||| || || | || ||||| ||| Sbjct 28850 GATAATGTACGACCATCTTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGT 28909 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| || | ||| || | |||| Sbjct 28910 GGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCT 28969 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| |||||||||||| ||||| || ||||| | || || ||||| Sbjct 28970 ACTTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29019 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| ||||||||||| | ||||| ||| || ||| || || ||| Sbjct 29018 ATACCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCA 29077 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| ||| |||| || | ||| || |||||||||||||| | || ||||| || Sbjct 29078 GACAATGTACGTCCATCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGG 29137 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || || || | ||| || | ||| Sbjct 29138 GGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCA 29197 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| |||||||||||| ||||| || ||||| | || || ||||| Sbjct 29198 ACTTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29247 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| ||||||||||| | ||||| ||| || ||| || || ||| Sbjct 29246 ATACCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCA 29305 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| ||| |||| || | ||| || |||||||||||||| | || ||||| || Sbjct 29306 GACAATGTACGTCCATCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGG 29365 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || || || | ||| || | ||| Sbjct 29366 GGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCA 29425 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| |||||||||||| ||||| || ||||| | || || ||||| Sbjct 29426 ACTTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29475 Score = 147 bits (162), Expect = 4e-30 Identities = 173/233 (74%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 192305 TAATA-CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||||| || ||||| | ||| | || ||||| | |||| || || |||||||||| Sbjct 28559 TAATAGCCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAA 28618 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || |||||||| ||| |||| || | ||||||||||||||| ||||| | |||||||| Sbjct 28619 TCCGATAATGTGCGTCCATCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCT 28678 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || || ||||| || || || || || ||| || || || | |||||| | Sbjct 28679 GGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGC 28738 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| | ||||||||| |||||||| || ||||| | || |||||||| Sbjct 28739 TCGACTTCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 28791 >seq314 Length=315434 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || || || ||||| | |||| || || ||| || || || || Sbjct 276263 ACCACCACGAAGTCGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGA 276204 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| || || |||| |||||||||||||| |||||||| || | |||||||| ||||| Sbjct 276203 TAAGGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGG 276144 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||||||||| || || |||||||| |||| ||| || | ||| || Sbjct 276143 AATGCCTTCTTTATCTTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAAC 276084 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || |||||||||||||| || | || || | ||| |||||||| Sbjct 276083 TTCGAGGGTAATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCAT 276036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984458153158200