Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1361 219 8e-52 seq314 143 5e-29 seq981 141 2e-28 seq1524 140 6e-28 seq1282 140 6e-28 >seq1361 Length=478162 Score = 219 bits (242), Expect = 8e-52 Identities = 374/535 (70%), Gaps = 7/535 (1%) Strand=Plus/Minus Query 38838 TATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATTCATA 38897 |||||| |||||| ||||| || || || ||||| ||||||||||||||| | |||| Sbjct 113250 TATTCACCAACTTTCTTTTCAAAGAAATTCGTTTTGCCTTCTAATGATATTTGTTCCATA 113191 Query 38898 AAATCAAATGGATTTTTGGTATTATAATATTTTTCTCC-TATC-AATACATATAATAATC 38955 || |||||||||| | | |||||| |||||| ||| || | ||| || | || | Sbjct 113190 AATGGAAATGGATTTGTCGAATTATA-TATTTT-CTCAATACCCAATTCACCAAGCAAAC 113133 Query 38956 TATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAA 39015 ||| || |||||||| | |||||| ||||||| | |||||||||||| || || | | Sbjct 113132 GATCTGCTACAAATTCTATGTATTGTGACATTAAATTACAATTCATACCTAACAAATCTA 113073 Query 39016 ATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataa 39075 |||| || || | |||||||| |||||||| || || | | ||||| | Sbjct 113072 CAGGTAGTGACTCTGTTAAAAATTCTTGTTCTATTTTAACGGCGTCTCGGATTATTTCTA 113013 Query 39076 ttatattattttttgataatttatatttaatatgattcgcatataGTAAACATGCAAAAT 39135 | | | |||| | ||| | | | ||| || | | || |||||| ||||| | Sbjct 113012 CAACACAGTCCTTTGTTGGTTTTTGTACCAAATGCTT-GAACAT--TAAACAAGCAAAGT 112956 Query 39136 CCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTA 39195 | |||||||||||| || | || || ||||| || ||| || | ||| ||||||| Sbjct 112955 CACAATGTAAACCTTCATCGCGTGAAATTAATTCGTTTGAAAAGGTCAGTCCCGGCATTA 112896 Query 39196 ATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCA 39255 | || | || || ||||||||||||||||||||||| | | || |||||||| || | Sbjct 112895 AGCCACGTTTCTTTAGCCAAAATATTGATGCAAAACTGCCACTGAAAAATATACCTTCAA 112836 Query 39256 CACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAATTTA 39315 || ||||||||| ||||| | | | || || || | | | | | | |||||||| | Sbjct 112835 CAGCCGCAAATGCAATTATACGTTCACCGAATGTTGCTGTTTTACTTGATATCCAATTCA 112776 Query 39316 TGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370 ||||| ||||| || || || | | || || |||| || || |||||||| Sbjct 112775 ACGCCCAGTCTGCCTTCTTCTTTACGCACGGCATTGTTTCAATTGCATTAAATAA 112721 Score = 143 bits (158), Expect = 5e-29 Identities = 226/322 (70%), Gaps = 4/322 (1%) Strand=Plus/Minus Query 39420 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCT 39479 |||||||| ||||||| | ||| ||||| ||||| || ||| || || ||||| Sbjct 112610 TACATTTCTGAATGTATATTTTCAATAGCAATTTGGAAGCCATAGAAGCATCTAGCTTCA 112551 Query 39480 GAATACTGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAG 39537 | | || ||||| || || |||||||||||||||| ||| ||||||||||| | Sbjct 112550 GTAACTTGCACTTCCTGGCTAA--ATCGTTCAACTAAATTTTCATTAACAATACCATCGG 112493 Query 39538 ATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTT 39597 ||||||| || ||||| | ||| | | |||||| |||| | ||| || | || | Sbjct 112492 ATGCTGCAAAAAATGCAAGAACGTGTGAGATAAAAAACCTTTCTTGATCGTTCAGTTTCT 112433 Query 39598 CCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGG 39657 |||| | | || | ||||| | ||||||||||| |||||| || |||||| | | Sbjct 112432 GCCAATCCTGTAAGTCATGCGATAAGTTTACTTCTTCTACTGTCCAGAACGATGCTTCAG 112373 Query 39658 ATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCGTTTAG 39717 |||||||||||||| |||| || || || ||| ||||||| ||| | ||| | | Sbjct 112372 CCTTTTTATACATTTGCCATATGTCTTGATATTGAATTGGAAATATAACAAAACGTCTTG 112313 Query 39718 TAtttttttCTAATATCGGTTC 39739 ||| | |||| |||||| Sbjct 112312 GATTATCGCGCAATAGCGGTTC 112291 >seq314 Length=315434 Score = 143 bits (158), Expect = 5e-29 Identities = 180/246 (73%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 171825 CTTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTT 171883 ||| ||| ||||| | |||||| | |||||| || || ||||| | |||| || || Sbjct 276281 CTTCTTACGTTTCTTGGCACCACCACGAAGTCGCAACACCAAATGAAGGGTAGATTCCTT 276222 Query 171884 AGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAA 171943 || || || |||||||| | || | || |||||||||||||| ||||| || || Sbjct 276221 TTGGATGTTGTAGTCTGATAAGGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATCAA 276162 Query 171944 TCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT 172003 | ||||| || ||||| || |||||||||||||| || || |||||||| || Sbjct 276161 ACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGAATCTTGGCCTTTACATTTTCGAT 276102 Query 172004 AGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATAT 172063 |||||| || | ||| ||||| || |||||||||||||| || | || || | || || Sbjct 276101 AGTATCGGATGGTTCAACTTCGAGGGTAATGGTTTTACCCGTAAGAGTCTTCACAAAGAT 276042 Query 172064 CTGCAT 172069 |||||| Sbjct 276041 CTGCAT 276036 >seq981 Length=59034 Score = 141 bits (156), Expect = 2e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | || || || || || || | || | ||| || ||||| || Sbjct 46943 ATGATACCACCACGGAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAG 46884 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || | || |||||||| |||||||| || || || | ||||| || Sbjct 46883 TCGGACAACGTACGGCCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCT 46824 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || || ||||||||||| ||||| ||| ||||| || |||||||| | | Sbjct 46823 GGTGGAATGCCCTCTTTATCTTGGATTTTGGCTTTCACATTTTCGATTGTATCTGATGGT 46764 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || ||||| || |||||||||||||| |||||||| | ||| |||||||| || Sbjct 46763 TCCACCTCTAGGGTGATGGTTTTACCAGTCAATGTTTTCACGAAGATCTGCATCTT 46708 >seq1524 Length=218836 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || |||||||| || | ||||| ||| || || || ||||| Sbjct 75 ATACCACCACGAAGACGCAATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCG 134 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| | || || | ||| |||||||| ||||| || | ||| || || || Sbjct 135 GACAATGTACGTCCATCTTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGA 194 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || || ||||| || | |||| Sbjct 195 GGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCT 254 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||||||||||||||| || ||||| | ||||| ||||| Sbjct 255 ACTTCTAAAGTAATGGTTTTACCAGTCAAAGTTTTGACAAATATTTGCAT 304 >seq1282 Length=29674 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || |||||||||||||| | ||| | ||||| || || || || Sbjct 28790 ATACCTCCACGTAGACGTAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCA 28849 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || | |||||||||||||||||| || | || || || ||| Sbjct 28850 GATAATGTACGACCATCTTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGT 28909 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || ||||| || ||||| || | |||| Sbjct 28910 GGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCT 28969 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||||||||| ||||| || ||||| | ||| || ||||| Sbjct 28970 ACTTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29019 Score = 132 bits (146), Expect = 9e-26 Identities = 170/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 171838 TAATA-CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||| || ||||| | || | || ||||| | |||| || || ||||||||| Sbjct 28559 TAATAGCCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAA 28618 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || ||||| | ||| | || || | ||||||||||||||||||||| | ||||| || Sbjct 28619 TCCGATAATGTGCGTCCATCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCT 28678 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || ||||| || || || || || ||| || || || |||||||| | Sbjct 28679 GGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGC 28738 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| | ||||||||| |||||||| || ||||| | ||| |||||||| Sbjct 28739 TCGACTTCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 28791 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || ||||||||||| | ||||| ||| || || || || || Sbjct 29018 ATACCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCA 29077 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| | || || | ||| || |||||||| ||||| | || || || || Sbjct 29078 GACAATGTACGTCCATCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGG 29137 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || || ||||| || | ||| Sbjct 29138 GGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCA 29197 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||||||||| ||||| || ||||| | ||| || ||||| Sbjct 29198 ACTTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29247 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || ||||||||||| | ||||| ||| || || || || || Sbjct 29246 ATACCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCA 29305 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| | || || | ||| || |||||||| ||||| | || || || || Sbjct 29306 GACAATGTACGTCCATCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGG 29365 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || || ||||| || | ||| Sbjct 29366 GGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCA 29425 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||||||||| ||||| || ||||| | ||| || ||||| Sbjct 29426 ACTTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905116403805600