Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq204 123 7e-23 seq1257 122 3e-22 seq664 120 9e-22 seq146 91.5 4e-13 >seq204 Length=47217 Score = 123 bits (136), Expect = 7e-23 Identities = 272/396 (69%), Gaps = 14/396 (4%) Strand=Plus/Plus Query 155400 AATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATG-CCTGTAATTGCTCCT 155458 |||| || ||||| || |||||||||||||| || || ||||| | | || ||| || | Sbjct 15467 AATGCATCAGCTAATCCTTGAACTCCAATACCAACGGGACGATGACGTTTATTTGATCGT 15526 Query 155459 GCTTGTCTTCTTGT-TTGGGTAAAAATTCACATCAATAATGTTATTTAAAT---TTGTAA 155514 || ||| || ||| ||| |||| | |||||| || ||||| |||| |||| | Sbjct 15527 TCT--GCTTGAGGTAATGGATAATAATTTATATCAATTATTTTATTCAAATTTCTTGTGA 15584 Query 155515 CCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAA 155574 |||| ||| ||||| || |||||| | | |||||||| || | || |||| Sbjct 15585 -CAAT--CTTTGTTACTTCCTTCAATTTCTTAAAATCAAATGTACGATTATTCTTCACAA 15641 Query 155575 ACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATT 155634 | || | |||| ||||| | ||| ||||||||| | || | | |||| |||| Sbjct 15642 ATTTATTCAATGCAATTGACGCTAAATTGCATACCGCAATTTCATCTTTATCGCAATATT 15701 Query 155635 CTACAATCTCACAGCACAGGTTAGAAC-TCTTGATGGTGCCTAAATTCTTCTGGTTAGAT 155693 | ||||| || ||||| || | || | || || || | ||||| ||| || ||| Sbjct 15702 CAACAATTTCTGTACACAGATTGCTGCATCGT-ATTGTTCCCAGATTCTGCTGATTTGAT 15760 Query 155694 TTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTC- 155752 || || || |||| ||| || ||||| || ||||| ||||| || || | |||| || Sbjct 15761 TTCCTATTGCAAGAATCTTTATATAGCATATATGGTGTTCCGGTTTCTACTTGTGACTCA 15820 Query 155753 CAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTG 155788 ||| | | || ||| | | ||||||||| || ||| Sbjct 15821 TAGATTTTATA-CCATAAGGCACGGGCATCAACTTG 15855 >seq1257 Length=283511 Score = 122 bits (134), Expect = 3e-22 Identities = 222/325 (68%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || || ||||||||||| || || || | | || |||| || || |||||| | |||| Sbjct 281476 CCCACTGCATCAATTTCATCGATAAACAAAATGCATGGAGCATGTTTTCTCGCTAATGCA 281535 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | || | ||||| || | |||| ||||||| ||||||||| || ||||| | Sbjct 281536 AACATGTCCCGAACACGTGAAGGGCCAACACCAACAAACATTTCTAAGAACTCAGATCCA 281595 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 ||||| ||||| | ||||||||||||||| ||| ||| | || | | ||| ||| Sbjct 281596 GATACCGTTATGAACGGTACATTTGCTTCGCCGGCTGTTGCTTTTGCTAACAATGTTTTA 281655 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 || ||||| |||||||| | | | || ||||| | || || || | | Sbjct 281656 CCAGTTCCTGGTGGTCCAGTAAGCATTGCACCTTTTGGAATCTTGGCACCTAAATCAATG 281715 Query 289270 TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCA 289329 |||| || || | ||||| || | |||| |||| | |||| ||| ||||| ||| Sbjct 281716 TATTGCTGTGGATTTTTTAAGAAATTAACAAATTCCATGATTTCAATTTTAGCCTCTTCA 281775 Query 289330 CATCCTGCTACATCAGCAAAAGTAA 289354 ||||| || || || |||| ||| Sbjct 281776 CATCCAGCAACGTCCCTAAAAATAA 281800 >seq664 Length=248144 Score = 120 bits (132), Expect = 9e-22 Identities = 190/270 (70%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || ||||| ||||| |||||||| ||| || ||| |||||||| ||| Sbjct 5226 TCCATAGCCTTTATCAAACGTCGCTGGATATAACCGGTTTCAGCTGTCTTTACAGCAGTA 5167 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 ||||| ||||| | | || |||||||||||||| | | || ||| | |||| Sbjct 5166 TCAATAAGACCTTCTCTGCCTCCCATAGCATGGAAATAAAATTCGGAAGGTGTTAAGCCG 5107 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 |||| | ||| ||||||||||||| | | || || || ||| ||| | || Sbjct 5106 GCCAA-GTACGAGTTCTCAACGAAACCTCTTGATTCAGGACCATAATCGTCTTTGATGAA 5048 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 ||||| || || || || | ||| | |||||||| || || || |||||||| || Sbjct 5047 ATGTGGTAGTGTTCTTTTACGGAAACCGAACGGGATACGTTTACCTTCTACGTTCTGTTG 4988 Query 302814 TCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||| | || | ||| | ||| |||||||| Sbjct 4987 TCCGACACAAGCAATAACCTGAGAAATATT 4958 Score = 98.7 bits (108), Expect = 3e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 304030 AAGTTGGGGTCAGGTGTAATTACAGAGCGAGCACTAAAATCAACACGCTTACCCATAAGA 304089 || || || |||||||||||||||| |||||||||||||||||||| |||||||| | | Sbjct 3738 AAATTTGGATCAGGTGTAATTACAGTACGAGCACTAAAATCAACACGTTTACCCATCAAA 3679 Query 304090 TTACCCCTAACACGACCGCCCTTACCGTTTAGCCTATCCTTGATTGCCTTCA 304141 ||||| | || ||| || |||| || || || | | |||| | ||| |||| Sbjct 3678 TTACCACGAATACGTCCTTCCTTTCCTTTAAGACGAGCCTTTAGTGCTTTCA 3627 >seq146 Length=262349 Score = 91.5 bits (100), Expect = 4e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 233260 TAAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAG 233319 ||||||| | |||||||||||||| ||||||||||||||| ||||||| ||| || Sbjct 198175 TAAAAATTGAGCGGCACCGTGAGCAATTTGACAATCACGTTCCATCTCACCAAAACGAAG 198234 Query 233320 ACCACCATCATTTGACCTACCCTGGACTGTTTGACG-AGTTAAAACAGTTCTTGGACCCT 233378 |||||| ||| | | ||| | | | |||||| | | | | || | |||||| Sbjct 198235 ACCACCGTCACGAGCACGACCTTCCATAGGTTGACGTACCAATATCTGTAC-TGGACCAC 198293 Query 233379 GAGCACGATAATTAATTTTATCTTTAACCATATGCTT 233415 |||||||| ||| ||||||||| | |||||||| || Sbjct 198294 GAGCACGAGAATGAATTTTATCGTCCACCATATGTTT 198330 Score = 84.2 bits (92), Expect = 6e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 |||||||||||||| ||| || ||||| | | ||| | ||||||| | || ||| Sbjct 198107 GCGATAAGACCACAGAAATTGCAAACATGAATACGGTATGGATCAGATACTTCGAATAAA 198166 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 || | || ||| |||||||| | ||| ||||||||| ||||| ||||| Sbjct 198167 CGTTCACGTAAAAATTGAGCGGCACCGTGAGCAATTTGACAATCACGTTCCATCTCACCA 198226 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACG 251567 |||||||||||||| || ||||| | ||| || ||| ||||| Sbjct 198227 AAACGAAGACCACCGTCACGAGCACGACCTTCCATAGGTTGACG 198270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471784938527684