Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq1282 136 4e-27 seq1524 131 2e-25 seq1651 114 1e-20 seq314 100 3e-16 seq981 98.7 1e-15 seq429 84.2 2e-11 >seq1282 Length=29674 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| |||| ||| || |||||||| | || ||||||||||| |||||||| || Sbjct 28793 CCTCCACGTAGACGTAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGAT 28852 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | ||||| ||||||||||||||| | |||| |||||||||||| || || Sbjct 28853 AATGTACGACCATCTTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGA 28912 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || || || | | ||| | || || | ||||||||| Sbjct 28913 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCTACT 28972 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | || || || ||||| ||||| ||||| ||||||||| Sbjct 28973 TCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29020 Score = 125 bits (138), Expect = 7e-24 Identities = 171/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 137181 ATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC 137240 || ||| |||| ||||| | || ||||| | ||||||||| || || || || ||||| Sbjct 28561 ATAGCCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATC 28620 Query 137241 GCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 137299 | ||||| || | || || ||||||||||||||| | || | |||||| ||||| | Sbjct 28621 CGATAATGTGCGTCCA-TCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTG 28679 Query 137300 GAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTT 137359 |||| |||||||| ||||| || || ||| | | ||| | || |||| || | Sbjct 28680 GAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCT 28739 Query 137360 CTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 | ||||| | ||| | ||||| || ||||| ||||| ||||| || |||||| || Sbjct 28740 CGACTTCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCATACCT 28795 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| |||||||| | ||||| || ||||| |||||||| || | Sbjct 29021 CCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 29080 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||| | || | ||||| ||||| || |||||| |||| | |||||||||||| || || Sbjct 29081 AATGTACGTCCA-TCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGG 29139 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| || || || | | ||| | || || | ||||| || Sbjct 29140 AATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAAC 29199 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| | ||| | || || || ||||| ||||| ||||| ||||||||| Sbjct 29200 TTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29248 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| |||||||| | ||||| || ||||| |||||||| || | Sbjct 29249 CCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 29308 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||| | || | ||||| ||||| || |||||| |||| | |||||||||||| || || Sbjct 29309 AATGTACGTCCA-TCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGG 29367 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| || || || | | ||| | || || | ||||| || Sbjct 29368 AATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAAC 29427 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| | ||| | || || || ||||| ||||| ||||| ||||||||| Sbjct 29428 TTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCATA 29476 >seq1524 Length=218836 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| ||||| |||| ||||| || || || |||||||||||| | Sbjct 78 CCACCACGAAGACGCAATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAC 137 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||| | || | ||||| ||||| |||||||| | |||| ||| |||||||| ||||| Sbjct 138 AATGTACGTCCA-TCTTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGG 196 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| || || || | | ||| | || || | |||||||| Sbjct 197 AATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCTAC 256 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| | ||| | || || || ||||| ||||| || |||||||||||| Sbjct 257 TTCTAAAGTAATGGTTTTACCAGTCAAAGTTTTGACAAATATTTGCATA 305 >seq1651 Length=647375 Score = 114 bits (126), Expect = 1e-20 Identities = 245/361 (68%), Gaps = 14/361 (4%) Strand=Plus/Plus Query 151090 CAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCAT 151149 || ||||| || |||| ||||| ||||||| || || || || || ||||| | Sbjct 382772 CAGCATAAAAA---CATCAGCCAATCCTTGAACCCCAATCCCAATTGGTCGATGTCTACG 382828 Query 151150 ATTAGAtttttttGCA---GTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAA 151206 ||| ||| || ||| | ||| || ||| |||| ||| || ||||||||||| Sbjct 382829 ATTCGATCGTTCTGCTTCTGGTTCC---GGATAGTAATTAATATCGATTATTTTATTCAA 382885 Query 151207 ACT-ATTCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTATCATTAT 151265 | | ||| | ||| |||| ||| | | ||| | | ||| ||| |||||| | || Sbjct 382886 ATTTATTGTCAACAC-TTTGGCCATATGCTTCAACATATTAAAGTCATAAGTATTCTCAT 382944 Query 151266 TGATAT---ATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCG 151322 | ||||||| | ||||||||||||| ||||||||| ||| |||| || | Sbjct 382945 CTACCACGAATTTATTCAATGCAATCGACGCTAAATTACATACAGCAATTTCATCTCGAT 383004 Query 151323 CGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTT 151382 | ||||||| | ||||| | ||||||||||| || || || |||| || Sbjct 383005 CACAATATTCCATGATTTCGGTGCACAAATTGCTACAGCGAATTGTACCCAAATTCTGTT 383064 Query 151383 GATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTT 151442 |||| ||| |||||||| || || || || ||||| ||||| || |||||||| ||| Sbjct 383065 GATTTGATTTACGGTTGCACGCATCTTTATACAACATATACGGCGTACCGGTTTCTACTT 383124 Query 151443 G 151443 | Sbjct 383125 G 383125 >seq314 Length=315434 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 ||||| || ||||||| |||||||| ||||| |||||||| || | |||| Sbjct 276250 CGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGTGCGACCA 276191 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| | ||||||||| ||| |||||| |||||| ||||| || || ||||||||||| Sbjct 276190 TCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTA 276131 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || ||| || |||| | ||| | || || | ||||| ||||| | || | Sbjct 276130 TCTTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTAATG 276071 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || || || | || || || || || ||||| Sbjct 276070 GTTTTACCCGTAAGAGTCTTCACAAAGATCTGCAT 276036 >seq981 Length=59034 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || || |||| || || || || || || ||||| ||| | Sbjct 46937 CCACCACGGAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCGGAC 46878 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| | ||| |||||||| |||||| |||||| ||||| || || Sbjct 46877 AACGTACGGCCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGA 46818 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| ||||| || ||||| ||| | | ||| | || |||| ||||| || Sbjct 46817 ATGCCCTCTTTATCTTGGATTTTGGCTTTCACATTTTCGATTGTATCTGATGGTTCCACC 46758 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || ||||||||||| ||||| || ||||| Sbjct 46757 TCTAGGGTGATGGTTTTACCAGTCAATGTTTTCACGAAGATCTGCAT 46711 >seq429 Length=166132 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 54800 GCTTCAATGTTGCCCAAATCACCGACGTGTCTCACCGCAGCGTTGGGCGCACCATGATTG 54859 |||| |||||| |||||||||||| | || | || || || | || || ||||| | Sbjct 144601 GCTTGAATGTTTCCCAAATCACCGGCATGACGTACTGCGGCATCTGGAGCCCCATGGTCC 144542 Query 54860 CTACCCGTCGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCAAAT 54919 |||| ||||||||||| ||| ||||| || |||||||| || |||| || ||| Sbjct 144541 TTACCATGTGGATTAAAATGGGGTCCAGCCGAGGTGCAGCCGTTTGTGTTGTCTCCGAAT 144482 Query 54920 TCGTGTACGTGAAAACCGTGCAGTCCTTT 54948 || || | ||| || || || || ||||| Sbjct 144481 TCATGAATGTGGAATCCATGGAGACCTTT 144453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488533423022400