Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1282 194 3e-44 seq1524 170 4e-37 seq314 150 4e-31 seq981 125 1e-23 seq1657 111 3e-19 seq644 84.2 4e-11 >seq1282 Length=29674 Score = 194 bits (214), Expect = 3e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||||||| || || || || || |||||||| ||||| ||||||||||| ||| Sbjct 28565 CCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATCCGAT 28624 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || || |||||||| |||||||| |||| | ||||||||||||||| Sbjct 28625 AATGTGCGTCCATCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGAGGA 28684 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| ||||| || |||||||| ||||| || || ||| Sbjct 28685 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCTCGACT 28744 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||| || ||||| || || || || |||||||| Sbjct 28745 TCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 28791 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| | ||||| |||||||| |||||||| || || || || |||| Sbjct 28791 TACCTCCACGTAGACGTAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAG 28850 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||| ||||| |||||||| |||||||| || | | ||| |||||||| | Sbjct 28851 ATAATGTACGACCATCTTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTG 28910 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| || || ||||||||||| |||||| |||||||| Sbjct 28911 GAATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCTA 28970 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||||| || || || || ||||| || || || || || ||||| Sbjct 28971 CTTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29019 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| ||||| || |||||||| || || || || || || |||| Sbjct 29019 TACCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAG 29078 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| ||||| || ||||||||||||| | ||| |||||||| | Sbjct 29079 ACAATGTACGTCCATCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGG 29138 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| || || || |||||||| |||||| |||||| | Sbjct 29139 GAATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAA 29198 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||||| || || || || ||||| || || || || || ||||| Sbjct 29199 CTTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29247 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| ||||| || |||||||| || || || || || || |||| Sbjct 29247 TACCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAG 29306 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| ||||| || ||||||||||||| | ||| |||||||| | Sbjct 29307 ACAATGTACGTCCATCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGG 29366 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| || || || |||||||| |||||| |||||| | Sbjct 29367 GAATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAA 29426 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||||| || || || || ||||| || || || || || ||||| Sbjct 29427 CTTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29475 >seq1524 Length=218836 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| |||||||| |||||||| || ||||| || || ||||| | Sbjct 76 TACCACCACGAAGACGCAATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGG 135 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| ||||| || ||||| || || | | || |||||||||| Sbjct 136 ACAATGTACGTCCATCTTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGAG 195 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| || || || |||||||| |||||| |||||||| Sbjct 196 GAATACCTTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCTA 255 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||||| || || || || ||||| || || |||||||| ||||| Sbjct 256 CTTCTAAAGTAATGGTTTTACCAGTCAAAGTTTTGACAAATATTTGCAT 304 >seq314 Length=315434 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| || || || || |||||||| || || || || || || |||| | | ||| Sbjct 276250 CGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGTGCGACCA 276191 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | |||||| || |||||||| | | |||||||||||| || || ||||| ||| Sbjct 276190 TCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTA 276131 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| || ||||||||||| || ||||| ||||| ||||| | || || Sbjct 276130 TCTTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTAATG 276071 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || || || || | ||||| ||||| |||||||| || Sbjct 276070 GTTTTACCCGTAAGAGTCTTCACAAAGATCTGCATGAT 276033 >seq981 Length=59034 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || ||||| || || || || ||||| ||||| || || | Sbjct 46939 TACCACCACGGAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCGG 46880 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| | ||| || ||||| ||||| | | |||||||||||| | Sbjct 46879 ACAACGTACGGCCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTG 46820 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || |||||||| || || ||||| |||||||| || ||||| ||||| | Sbjct 46819 GAATGCCCTCTTTATCTTGGATTTTGGCTTTCACATTTTCGATTGTATCTGATGGTTCCA 46760 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || || || || ||||| || || || || |||||||| Sbjct 46759 CCTCTAGGGTGATGGTTTTACCAGTCAATGTTTTCACGAAGATCTGCAT 46711 >seq1657 Length=82118 Score = 111 bits (122), Expect = 3e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 82688 TTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGT 82747 |||||| ||||| || ||||||||||||||||| || || ||||| |||||||||||||| Sbjct 82111 TTGTTGGTCTGGTGGGATTCCTTCCTTATCTTGGATTTTGGCTTTCACATTTTCAATCGT 82052 Query 82748 ATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 ||| || || || |||| || || || ||||| ||||| || || || || ||||| Sbjct 82051 ATCGGATGGCTCAACCTCCAGGGTGATAGTTTTGCCAGTCAATGTTTTAACGAAGATCTG 81992 Query 82808 CATTATTAT 82816 ||| |||| Sbjct 81991 CATCTTTAT 81983 >seq644 Length=264193 Score = 84.2 bits (92), Expect = 4e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 198325 AAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGC 198384 |||| ||||| | |||||||||| | ||| |||| || ||| |||||||| |||| Sbjct 215058 AAACGCATGATCAATTATGGAATGCCGCTCAATTACAATTGTCAAGGGAAGGAAAGATGC 215117 Query 198385 ATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAG 198444 || | | | | | ||||| ||||||||||||||| | || ||||| || || || | Sbjct 215118 ATGGATATCTTCGTATGTATTGGGCTAAAAAGATATTAGAGTGGACTGCCACTCCCGAGG 215177 Query 198445 ACGCTTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTA 198504 | ||| || | ||||| ||||| ||| || | | |||| ||| ||||| | Sbjct 215178 AAGCTCTGGGAACAAGTATATATCTTAACGATCGCTTCAGTTTAGATGGCCGTGATCCAA 215237 Query 198505 ACGGATACGTAGGT 198518 |||| || || ||| Sbjct 215238 ACGGTTATGTTGGT 215251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981805412027148