Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1341 89.7 9e-13 seq644 86.0 1e-11 >seq1341 Length=277294 Score = 89.7 bits (98), Expect = 9e-13 Identities = 148/213 (69%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 143100 TGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGAT---ATAAATAAACCTCTTATT 143156 ||||||||| | |||| | || | | | || |||||| ||||| ||||| | Sbjct 235049 TGCGATAATCTGTTAACTTGTACAATTCGTGCTTGGGATCTAATAAAAAAACCCATCTAC 234990 Query 143157 TTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACATATAGAT 143216 |||||||| |||||||||| | |||| || ||||| ||||| |||| || || || Sbjct 234989 TTTTGTCCTGCTATGAATACCAGGATGTATGATCATCCGATTACTGAAACCCAAATGAAT 234930 Query 143217 GCTTTAAAACATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaCTAGCCTGCGGA 143276 | ||| ||| | ||| || | ||| || || ||| |||| ||| ||||| Sbjct 234929 GTTTTGAAAGGTTGGGGATTTAGAGAGATCCCTTGTATATCGAAAACTCTAATGTGCGGT 234870 Query 143277 GACATAGGAAATGGTGCTATGGCAGAAGTTACA 143309 |||| ||||| |||||||||||||| ||| || Sbjct 234869 GACACGGGAAACGGTGCTATGGCAGAGGTTCCA 234837 >seq644 Length=264193 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 182968 AGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCAGAAACACATGACCCTCTATGG 183027 ||| | ||||||||| | | | || | | | ||| | |||| ||||| | ||||| Sbjct 215018 AGAGAATATATCTATACGAGAGAGGAATTTGCAGAGGGAAAAACGCATGATCAATTATGG 215077 Query 183028 AATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTAC 183087 ||||| | ||| |||| || || |||||||| |||||| | | | | || ||||| Sbjct 215078 AATGCCGCTCAATTACAATTGTCAAGGGAAGGAAAGATGCATGGATATCTTCGTATGTAT 215137 Query 183088 TGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTATAGTATC 183147 ||||||||||||||| | || ||||| ||||| || || ||| || | ||||| Sbjct 215138 TGGGCTAAAAAGATATTAGAGTGGACTGCCACTCCCGAGGAAGCTCTGGGAACAAGTATA 215197 Query 183148 TATATGAACAAT 183159 ||| | ||| || Sbjct 215198 TATCTTAACGAT 215209 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 182398 CCAGATAATATACCTTTTATACAGGTAGACGCTCACAATATAGTACCTTGTTGGGAAGCT 182457 || ||| || | ||| ||||||||| || |||| ||||| ||||| |||||||||| Sbjct 214383 CCTGATGATGTGGCTTATATACAGGTGGATTCTCATAATATTGTACCAGTTTGGGAAGCT 214442 Query 182458 TCTGACAAAGAAGAATACGGTGCAAGAACTTTAAGAAAAAAGAT 182501 |||| ||| ||||||| | |||||||| ||||||| ||||| Sbjct 214443 TCTGCTAAACAAGAATATGCCGCAAGAACAATAAGAAATAAGAT 214486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903391641147520