Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq204 165 2e-35 seq1651 161 2e-34 seq664 98.7 2e-15 seq108 87.8 4e-12 >seq204 Length=47217 Score = 165 bits (182), Expect = 2e-35 Identities = 509/776 (66%), Gaps = 15/776 (2%) Strand=Plus/Minus Query 110370 CCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTT 110429 ||||||||| |||| | |||||||| | || |||||||| | |||||| | | || Sbjct 16503 CCTCAACACTTGTTGATGCGTGTTGCTGTCGGCATTCATGGTGAAGATATTGATGATGCC 16444 Query 110430 ATTGAATGTTATGATGTATTAAGTAAAAA-GAAAGCT-ATTCATGCTACTCCTACCCTAT 110487 |||||| ||| || | || || | || | | | ||||| || || || | | Sbjct 16443 ATTGAAACGTATAATCT--TATGTCGCAGCGATATTTTACACATGCCACACCGACTATGT 16386 Query 110488 TTAACGCAGGAACTA-ATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGAT 110546 || || ||||| | |||| |||||| | ||||| ||||| | || | |||| Sbjct 16385 TTGCTGCTGGAACACCACGGAGT-CAATTGTCATCTTGTTTTCTGTTGTCTATGACCGAT 16327 Query 110547 GATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCT 110606 ||| ||| | || |||||||| | || |||| || ||||||| || | | Sbjct 16326 GATAGTATCCATGGGATTTATGAAACGCTCGGTCAAACAGCGGTTATTTCAAAGCATGCG 16267 Query 110607 GGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCG 110666 || || || || | | || ||| |||| | | ||||| |||| || | | | Sbjct 16266 GGTGGCATAGGATTAAATGTACATTGTATTAGAGCGAAAGGGACAAAAATTGAAGGCACT 16207 Query 110667 AAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATAT 110726 ||| ||||| || |||||||| ||| | | || || | ||||| ||| Sbjct 16206 GGCGGTATTTCAAGCGGTCTTGTTCCCATGCTTCGTGTATTTGATACAACTGCTGCCTAT 16147 Query 110727 GTGAATCAAGGTGGTAA---GAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCAT 110783 || ||||||| ||||| |||| ||| | |||||||| ||||| ||||||||||| Sbjct 16146 GTTGATCAAGGGGGTAATAAGAGACCTGGTGCTTTTGCTATTTATCTTGAACCTTGGCAC 16087 Query 110784 TCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCA-AGGATTTGAAGAACAAAGAGC 110842 | ||||| || || ||| | || || ||| | || || || || || | || Sbjct 16086 GCTGATATTTTCGAGTTCCT-TAATTTGAAAAAGAACACCGGCGCGGAGAAAGAACGTGC 16028 Query 110843 ACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAA 110902 || ||| |||||||||| | |||||| |||||||||| ||| |||||||| ||| | Sbjct 16027 TCGGGATCTATTTTATGCTTTATGGATTCCAGATTTATTTATGGAACGTGTTGAAGCTGA 15968 Query 110903 TGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAA 110962 ||||| ||| | | |||||||| || | ||| || || | |||| || || | Sbjct 15967 TGGCAAATGGAGTTTAATGTGTCCGCACGAATGTCCCGGACTTTTTGATTCATGGGGTGA 15908 Query 110963 AGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA--ACAAATT 111020 || ||| || | || || ||||| |||| || || | | | || |||| || Sbjct 15907 TGACTTTAAAATATTATATGAGAAATACGAAAGTGAGGG--ACGTGCTAAACGACAAGTT 15850 Query 111021 CCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTAT 111080 || | | | |||| |||||| ||| |||||||| ||||| ||||| || ||| Sbjct 15849 GATGCCCGTGCCTTATGGTATAAAATCTATGAGTCACAAGTAGAAACCGGAACACCATAT 15790 Query 111081 ATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAAT 111136 || | ||||||||| | ||| | ||||| ||||| |||| | |||||||| Sbjct 15789 ATGCTATATAAAGATTCTTGCAATAGGAAATCAAATCAGCAGAATCTGGGAACAAT 15734 >seq1651 Length=647375 Score = 161 bits (178), Expect = 2e-34 Identities = 295/429 (69%), Gaps = 5/429 (1%) Strand=Plus/Minus Query 110731 ATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAG 110787 ||||| |||| || | || ||| ||| | ||||| || | ||||| |||||| | | Sbjct 383454 ATCAAAGTGGAAACAAACGACCTGGATCAATGGCTATTTACTTAGAACCATGGCATGCTG 383395 Query 110788 ATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA-GAGCACGT 110846 ||||| || || || || || || | || | | | |||| | | ||| | Sbjct 383394 ATATAAAAGATTTTCTA-AATTTGAAGAAGAACACTGGTGTTGAGAATGATCGTGCAAGA 383336 Query 110847 GATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGC 110906 ||||| |||||||| | |||||| | |||||||| ||||| || || ||| ||| Sbjct 383335 GATTTGTTTTATGCTCTTTGGATTCCTGATTTATTTATGAAGCGAGTAGAAGCTGATGAT 383276 Query 110907 ATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAG 110966 ||||| ||| |||||||| ||| | ||||||||||| |||| | ||||| || Sbjct 383275 GTGTGGAGTCTGATGTGTCCACATGAGTGTCCTGGTCTATTTGATTGTTGGGGAAATGAA 383216 Query 110967 TTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCT 111026 || || || | || |||| |||||||| ||| | | ||||| | |||| Sbjct 383215 TTCGATGAATTATATCAAAAGTATGAAAAGGAAAAACGCTATAAGGAACAAGTGAAAGCT 383156 Query 111027 CAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTG 111086 | ||| |||||| ||||| |||||||||||| ||||| || || || ||||| ||| Sbjct 383155 CGAGATATTTGGTATAAAATTTATGAATCACAAGTAGAAACCGGTACGCCGTATATGTTG 383096 Query 111087 TATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGT 111146 ||||||||| || || ||||| |||||| |||||| || |||||| | ||| Sbjct 383095 TATAAAGATGCGTGCAACCGTAAATCAAATCAACAGAATTTGGGTACAATTCGCTGTAGC 383036 Query 111147 AATTTGTGC 111155 ||||||||| Sbjct 383035 AATTTGTGC 383027 >seq664 Length=248144 Score = 98.7 bits (108), Expect = 2e-15 Identities = 173/250 (69%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945 ||||||| ||| | || ||||| | || ||||| || | ||||| | ||| Sbjct 3548 TTACAATTCCATGTGGCCACATTTGTTGACAATGATATACCAGGAATGCCACGTGCAATG 3607 Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005 || | |||||| | ||| || || | | | | || ||||||| || || || ||| Sbjct 3608 CAGAAATCTGGTAAACCATTGAAAGCACTAAAGGCTCGTCTTAAAGGAAAGGAAGGACGT 3667 Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065 ||||| |||||| | ||||| |||||||||||||||||||| | | |||||| |||||| Sbjct 3668 ATTCGTGGTAATTTGATGGGTAAACGTGTTGATTTTAGTGCTCGTACTGTAATTACACCT 3727 Query 305066 GATTCTCAAATT--AGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAA 305123 ||| |||||| | || || || | || || ||| | |||||| || ||| Sbjct 3728 GAT--CCAAATTTGCGGATTGATCAAGTCGGTGTGCCACGTAGTATTGCTCAGAATTTAA 3785 Query 305124 CATTTCCAGA 305133 ||||||| || Sbjct 3786 CATTTCCCGA 3795 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/163 (75%), Gaps = 8/163 (5%) Strand=Plus/Plus Query 305329 GGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAA 305388 |||| |||||||| |||| ||| | | ||||| ||| |||||||| ||| ||||| Sbjct 3985 GGTTGTGTTCAATCGGCAGCCAACGTTACATAAGATGAGTATGATGGGCCATCGTGTCAA 4044 Query 305389 AGTA-TTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG---CCTTATAATG 305444 |||| || |||| | ||||||||| | ||| || | ||||| || || |||| Sbjct 4045 AGTACTTCCCTGG-TCCACATTTCGAATGAATTTAT---CATGTACATCACCATACAATG 4100 Query 305445 CGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 | ||||||||||| ||||||||||| | || ||||||||||| Sbjct 4101 CTGATTTTGATGGTGATGAAATGAACTTACACGTACCTCAATC 4143 >seq108 Length=119211 Score = 87.8 bits (96), Expect = 4e-12 Identities = 85/104 (82%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 167240 CATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAA 167298 ||| | |||||| |||||||| || || | | || ||||||||||||||||||| |||| Sbjct 14386 CATCATACCACCCGCATTATCAAACTC-TCCACAGTAATTTGGTGCTGAAAATAATGTAA 14328 Query 167299 CTAATTTACGA-TTGAAAAATAATTCATAACCATCTTCAACAAC 167341 |||||| | ||| |||| |||||||| |||||||||||||| Sbjct 14327 CTAATTGCCTCCTTGCAAAA-AATTCATACCCATCTTCAACAAC 14285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186786463140452