Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1524 127 5e-24 seq1282 107 5e-18 seq981 105 2e-17 seq314 105 2e-17 >seq1524 Length=218836 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| |||||| | || || ||||| || ||||| ||||| ||| |||||| Sbjct 301 CAAATATTTGTCAAAACTTTGACTGGTAAAACCATTACTTTAGAAGTAGAACCTTCTGAT 242 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| ||||| || ||||| ||| || || || Sbjct 241 ACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAGCAG 182 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || ||||| || ||||| | ||||||||| | || ||| ||||||||||| || Sbjct 181 CGTTTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGTACATTGTCCGATTACAACATC 122 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||||||||||||| | || ||| | ||||| Sbjct 121 CAGAAGGAGTCTACTCTTCACTTAGTATTGCGTCTTCG 84 >seq1282 Length=29674 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || |||||||| || ||||| ||||| ||| |||||| || | ||| Sbjct 29233 CAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCTGATACCATTGAAAA 29174 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| ||||| || ||||| ||| || || ||| | | ||||| Sbjct 29173 CGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAGCAACGTTTAATCTT 29114 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| | ||||||||| | || ||| | || |||||| |||| || ||||| Sbjct 29113 TGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAACATCCAAAAGGAGTC 29054 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| || | || ||| | ||||| Sbjct 29053 TACTCTCCATTTAGTATTGCGTCTTCG 29027 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || |||||||| || ||||| ||||| ||| |||||| || | ||| Sbjct 29461 CAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCTGATACCATTGAAAA 29402 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| ||||| || ||||| ||| || || ||| | | ||||| Sbjct 29401 CGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAGCAACGTTTAATCTT 29342 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| | ||||||||| | || ||| | || |||||| |||| || ||||| Sbjct 29341 TGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAACATCCAAAAGGAGTC 29282 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| || | || ||| | ||||| Sbjct 29281 TACTCTCCATTTAGTATTGCGTCTTCG 29255 >seq981 Length=59034 Score = 105 bits (116), Expect = 2e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| | || |||||| || || ||| ||||| Sbjct 46726 AAAACATTGACTGGTAAAACCATCACCCTAGAGGTGGAACCATCAGATACAATCGAAAAT 46785 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| ||||| || ||| || || ||| | | ||||| Sbjct 46786 GTGAAAGCCAAA-ATCCAAGATAAAGAGGGCATTCCACCAGATCAACAACGTTTGATCTT 46844 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || ||||| ||||||||||| | || ||| |||| ||||| ||||||| ||||| Sbjct 46845 CGCTGGTAAGCAATTGGAAGATGGCCGTACGTTGTCCGACTACAATATCCAGAAGGAGTC 46904 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || ||| | || || Sbjct 46905 AACCCTTCACTTGGTGTTGCGTCTCCG 46931 >seq314 Length=315434 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || ||||| || || | ||||| ||| || || Sbjct 276039 CAGATCTTTGTGAAGACTCTTACGGGTAAAACCATTACCCTCGAAGTTGAACCATCCGAT 276098 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| |||||| ||||||||||| |||||||| ||| || || ||| Sbjct 276099 ACTATCGAAAATGTAAAGGCCAAGATTCAAGATAAAGAAGGCATTCCACCAGATCAACAA 276158 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| ||||| || || ||||||||||| | || || | || |||||| || Sbjct 276159 CGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACCTTATCAGACTACAACATC 276218 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || ||||| ||||| | || ||| ||||||| Sbjct 276219 CAAAAGGAATCTACCCTTCATTTGGTGTTGCGACTTCG 276256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181794573919172