Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1651 138 1e-27 seq314 134 1e-26 seq981 122 8e-23 seq1282 100 3e-16 seq1524 86.0 6e-12 >seq1651 Length=647375 Score = 138 bits (152), Expect = 1e-27 Identities = 424/645 (66%), Gaps = 12/645 (2%) Strand=Plus/Plus Query 146571 CGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTG 146630 ||| || |||||||| |||||||||||||| || || ||||| || | ||| | | Sbjct 382079 CGCAGCTGGTTTTGTTCGCAAATAATACATACCGGTCTTGAGACCCATTTTCCAAGCATA 382138 Query 146631 ATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTG 146690 || || ||| |||| | ||| ||||| | ||||| || |||||| ||||| Sbjct 382139 GAAATGGATAGAACTCATCTTCATGTATGTCGGTTGTGCCACATGAATATTAAATGATTG 382198 Query 146691 GCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTC-A 146749 || ||||| || || || |||||| || ||||| | ||| | |||||| | | Sbjct 382199 ACTCTGATCAATAAATGCACCGCGGTCCGCTGCCATTTTAATAGT-CGTTTTCACCGATA 382257 Query 146750 TTTCCCAAGCGGTTTTGTACAGC--CCCTTAACGCTATCTGGAATACCTTCAATGTTTTG 146807 | |||||| ||||||| || || | | | || || ||||||| | ||| || || Sbjct 382258 TCTCCCAAACGGTTTTATA-AGTTTCGCGAATTGCC-TCCGGAATACTTGTAATATTCTG 382315 Query 146808 AATAGAGCCCTTGTGCGCAA--AAATAGTGTTTCGTAT-TTCGGGCGTGTAAAGGTTTAG 146864 | ||| || | | || | || | | | || | | |||| | |||| || | Sbjct 382316 CACAGAACCATAATTTGCCACCAACTGATTTCTCATGTCTTCGTTCCA-TAAA--TTCAA 382372 Query 146865 TTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACG 146924 |||||| | || | | ||||| |||| ||||| ||||||||||| | |||||||| Sbjct 382373 TTTAATCAATTCGTTCACTAAATGAGGATTCACCACCTGAAACTCGCCAGATAGCACACG 382432 Query 146925 TCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGC 146984 | ||| | ||| ||| |||| ||||| || |||||||| || | ||||| || Sbjct 382433 ACGTGTATAAATATTTGACGTGTAAGGTTCAAACGATTCATTATTCCCAAGAATTTGTGC 382492 Query 146985 CGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGAT 147044 ||| | || || ||||| || | ||| || ||||| || | ||| | | | || Sbjct 382493 CGTCGAAGCAGTTGGCATCGGAGCAATCAATAACGAATTGCGAACACCATTCTTGCTAAT 382552 Query 147045 GTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTA 147104 || || ||||| | | ||| | ||||| | | || || || | |||||| || | Sbjct 382553 CTTTTCTTTCAACGAGTTCCAATTCCACAGAGCAGTTGGTGTTACTTCCCACATATCAAA 382612 Query 147105 CTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTG 147164 ||| | | ||| ||| | ||||| || || |||| ||| |||| | | Sbjct 382613 CTGCAATATCCCTTTACTCACTGGACTTCCTGCATACGTCTCATAGGTTCCATATTTTTC 382672 Query 147165 CGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTC 147209 ||||||||||||||||| || | || || || || |||||||| Sbjct 382673 TGCCAATTCACAGCTTGCTTCTAAAGCCCCGTAATAAATGGTTTC 382717 >seq314 Length=315434 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | || || ||||| ||||||||||| | ||| || | Sbjct 276250 CGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGTGCGACCA 276191 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||||| | |||| | ||| ||||||||||| || |||||||||||| Sbjct 276190 TCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTA 276131 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || || | | ||| | |||||||| || || ||||||| || | Sbjct 276130 TCTTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTAATG 276071 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 |||||||| || ||||| || | || |||||||||| Sbjct 276070 GTTTTACCCGTAAGAGTCTTCACAAAGATCTGCATGA 276034 >seq981 Length=59034 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | ||||||| || || || ||||||||| || ||||| | Sbjct 46925 CGCAACACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCGGACAACGTACGGCCA 46866 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || ||||| | |||| | ||| ||||||||||| || ||||| |||||| Sbjct 46865 TCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCTTTA 46806 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||||| | ||| | ||||| | || ||||| || | || | Sbjct 46805 TCTTGGATTTTGGCTTTCACATTTTCGATTGTATCTGATGGTTCCACCTCTAGGGTGATG 46746 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| ||||| | ||| |||||||| Sbjct 46745 GTTTTACCAGTCAATGTTTTCACGAAGATCTGCAT 46711 >seq1282 Length=29674 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || ||||| | | ||||| ||||| ||||||||||| || ||||| | Sbjct 29033 CGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTACGTCCA 29092 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || || | | |||||| ||| || |||||||| || || ||||| || Sbjct 29093 TCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTG 29152 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | ||||| | || || ||||| | || | Sbjct 29153 TCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATG 29212 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| |||||| | |||||| ||||| Sbjct 29213 GTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29247 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || ||||| | | ||||| ||||| ||||||||||| || ||||| | Sbjct 29261 CGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTACGTCCA 29320 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || || | | |||||| ||| || |||||||| || || ||||| || Sbjct 29321 TCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTG 29380 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | ||||| | || || ||||| | || | Sbjct 29381 TCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATG 29440 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| |||||| | |||||| ||||| Sbjct 29441 GTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29475 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGA 131967 || || || ||||| | | || |||||||| ||||||||||| | | || ||||| Sbjct 28805 CGTAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGATAAT-GTACGACC 28863 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| || |||||||| | | | || | ||| || |||||||| || || ||||| || Sbjct 28864 ATCTTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTT 28923 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || || || | | ||| | ||||| | || || ||||| | || | Sbjct 28924 GTCTTGGATCTTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAAT 28983 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| |||||| | |||||| ||||| Sbjct 28984 GGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29019 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||| || || |||||||| | | | |||| ||| |||||||||||||| |||||||| || Sbjct 28636 ATCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGAGGAATGCCTTCCTT 28695 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || || ||| | | ||| | ||||| | ||||| ||||| | || | Sbjct 28696 GTCCTGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAAT 28755 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||||| ||||| | ||| |||||||| Sbjct 28756 GGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 28791 >seq1524 Length=218836 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || || || | | ||||| || || |||||||| ||| || ||||| | Sbjct 90 CGCAATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGACAATGTACGTCCA 149 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || ||||| | | || | |||||| ||||||||||| || ||||| || Sbjct 150 TCTTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTG 209 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | ||||| | || || ||||| | || | Sbjct 210 TCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATG 269 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| |||||| | || || ||||| Sbjct 270 GTTTTACCAGTCAAAGTTTTGACAAATATTTGCAT 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476600881367520