Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1361 196 4e-45 seq922 170 2e-37 seq1606 116 3e-21 >seq1361 Length=478162 Score = 196 bits (216), Expect = 4e-45 Identities = 242/326 (74%), Gaps = 10/326 (3%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | ||||||||||||||||| ||||||||||||||||| ||||| || | || Sbjct 112321 TTTGTTATATTTCCAATTCAATATCAAGACATATGGCAAATGTATAAAAAGGCTGAAGCA 112380 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTG-CATT 43818 || || ||||||| ||||||||| | || | | |||||| || |||||| || Sbjct 112381 TCGTTCTGGACAGTAGAAGAAGTAAACTTATCGCATGACTTA---CA--GGATTGGCAGA 112435 Query 43819 AA---AACCA-CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 || ||| | ||||||| |||||| || ||| | || |||||||| || || Sbjct 112436 AACTGAACGATCAAGAAAGGTTTTTTATCTCACACGTTCTTGCATTTTTTGCAGCATCCG 112495 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAG 43934 | || || || ||||||||||| ||| || ||| || ||||| ||| | | |||| Sbjct 112496 ATGGTATTGTTAATGAAAATTTAGTTGAACGATTTAGCCAGGAAGTGCAAGTTACTGAAG 112555 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 | |||| || ||||| || |||||||| || |||||||| ||||| |||||||||||| Sbjct 112556 CTAGATGCTTCTATGGCTTCCAAATTGCTATTGAAAATATACATTCAGAAATGTACAGTA 112615 Query 43995 TTCTGATAGATACGTACATCAAAGAT 44020 | |||| ||||| |||||||| ||| Sbjct 112616 TCTTGATTGATACATACATCAAGGAT 112641 Score = 181 bits (200), Expect = 8e-41 Identities = 380/550 (69%), Gaps = 26/550 (5%) Strand=Plus/Plus Query 44039 TTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAA 44097 || |||||||| || |||||| | || |||| | || | || ||||||||||| | || Sbjct 112721 TTATTTAATGCAATTGAAACAATGCCGTGCG-TAAAGAAGAAGGCAGACTGGGCGTTGAA 112779 Query 44098 ATGGATA--AATTCAAA-TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 |||||| || | ||| | | || || ||||| | | || ||||| | ||| || Sbjct 112780 TTGGATATCAAGTAAAACAGCAACATTCGGTGAACGTATAATTGCATTTGCGGCTGTTGA 112839 Query 44155 AGGCATTTTCTTTTCA--GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTG 44212 ||| || | |||||| || ||||| | ||||||||| |||||||||| || || Sbjct 112840 AGGTATAT--TTTTCAGTGGCAGTTTTGCATCAATATTTTGGCTAAAGAAACGTGGCTTA 112897 Query 44213 ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGAT 44272 ||||| || |||| |||||||| || ||||| || |||||||| |||||||| || Sbjct 112898 ATGCCGGGACTGACCTTTTCAAACGAATTAATTTCACGCGATGAAGGTTTACATTGTGAC 112957 Query 44273 TTTGCTTGCT---TGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGAC--AA 44327 |||||||| | |||| | | || | | || | || || || | ||| Sbjct 112958 TTTGCTTGTTTAATGTT-CAAGCATTT----GGTAC-AAAAACCAACA--AAGGACTGTG 113009 Query 44328 TTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTAC 44387 || ||| || | ||| || || || ||||||||||||||| | ||| || ||| Sbjct 113010 TTGTAGAAATAATCCGAGACGCCGTTAAAATAGAACAAGAATTTTTAACAGAGTCACTAC 113069 Query 44388 CTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAG 44447 ||||| |||| |||| |||||| ||| ||| ||||| || |||| | |||| Sbjct 113070 CTGTAGATTTGTTAGGTATGAATTGTAATTTAATGTCACAATACATAGAATTTGTAGCAG 113129 Query 44448 ATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTAT-ATTGTACAAAACCCGTTTGAT 44506 ||||||| ||| ||| ||||| || ||| ||| ||| || ||| || ||| Sbjct 113130 ATCGTTTGCTTGGTGAATTGGGTATTGAGAAAATATATAATTCGAC-AAATCCATTTCCA 113188 Query 44507 TTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAA 44566 ||||||||| | || || || ||||||||||| || || |||||||| ||||| ||| Sbjct 113189 TTTATGGAACAAATATCATTAGAAGGCAAAACGAATTTCTTTGAAAAGAAAGTTGGTGAA 113248 Query 44567 TATCAGCGAA 44576 ||| ||||| Sbjct 113249 TAT--GCGAA 113256 >seq922 Length=449141 Score = 170 bits (188), Expect = 2e-37 Identities = 487/760 (64%), Gaps = 63/760 (8%) Strand=Plus/Plus Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301 |||||| || || ||||||||| || |||||| ||| | || |||| || || || Sbjct 231694 AATTGGTGGCTTAGATAAAGAGTTCAATGCAATCTTCCGTCGTGCGTTTGCTTCTCGAGT 231753 Query 19302 TTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTA 19361 ||| || |||| || ||| |||| ||||| ||||| ||||| || || || | || || Sbjct 231754 ATTTCCTCCAGAAGTAATTGAACAGTTGGGCTGTAAGCATGTCCGAGGTATTCTCCTATA 231813 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAA 19421 || ||||| ||| ||| ||||| | || ||| | || || ||||| | || | Sbjct 231814 CGGTCCACCTGGTACTGGTAAAACTCTTATGGCGCGTCAAATTGGTAAAATGCTGAACGC 231873 Query 19422 ACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGA 19481 | | || |||||||| |||||||| | || || |||||||||| ||| |||| || Sbjct 231874 TCGAGAACCAAAAATTGTGAATGGTCCACAGATTTTGGATAAATATGTGGGTGAATCAGA 231933 Query 19482 AGAAAATGTACGACGTTTGTTTGCTGACGCTGAAG---AAGAACAAA------------- 19525 || ||||| || ||||| |||||||| ||||||| ||||| || Sbjct 231934 AGCTAATGTTCGTCGTTTATTTGCTGATGCTGAAGAAGAAGAAAAACGAGTAAGTCCTTA 231993 Query 19526 ---------AAC--------GTTTA-----------------------GGGCGCAAA-AG 19544 ||| ||||| |||| | || || Sbjct 231994 ATTGTATATAACTATAGTATGTTTACTGAATATATTCAAATTATAGTTGGGCCCGAATAG 232053 Query 19545 TTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--- 19601 | | | || || || || | |||||| | || ||||| ||||| | ||||| Sbjct 232054 TGGTCTTCATATCATTATTTTCGATGAAATTGATGCAATTTGTAAAGCTCGTGGTTCAGT 232113 Query 19602 ---TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658 |||| | ||| ||||||||||| |||||||||||| | | | ||| | || || Sbjct 232114 GGCTGGTAACAGTGGTGTACATGACACCGTTGTCAATCAATTGTTAGCTAAAATCGATGG 232173 Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA 19718 |||| | ||| |||| |||||||| || ||||| ||||| |||||| ||| | || || Sbjct 232174 TGTTGAACAATTGAACAATATTTTGGTAATTGGTATGACCAATAGAAAGGATATGATTGA 232233 Query 19719 CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778 || | | ||||| ||||| ||||| || | | ||||| | ||||||||||| Sbjct 232234 TGAAGCTCTGATGCGACCGGGTCGATTGGAGGTACAAGTTGAAATCAGTTTACCCGATGA 232293 Query 19779 ATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTT 19838 ||| ||||| | ||||| ||||| || ||| | ||| | || | || | Sbjct 232294 GGATGGTCGTGTACAGATTTTGAACATTCACACAGCTCGTATGAAAGAATACAAAAAAAT 232353 Query 19839 AAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGA 19898 ||| ||||| || || |||| | || || || ||||| | || || || || Sbjct 232354 CAATCCAGATGTGAATATACGAGAATTAGCGTCGAAAACTAAAAATTTCAGTGGAGCTGA 232413 Query 19899 ACTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 |||| || ||||| | || || |||||| |||||| Sbjct 232414 GATTGAAGGTTTAGTACGTGCTGCACAATCATCGGCAATG 232453 >seq1606 Length=54755 Score = 116 bits (128), Expect = 3e-21 Identities = 239/350 (68%), Gaps = 4/350 (1%) Strand=Plus/Minus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 ||||||| | ||||| ||||| || ||||| | | |||||||||| || | ||| | | Sbjct 17239 AGGTGATTTGGGTCCCGTTTACGGTTTTCAATGGAGACATTTTGGCGCCGACTATAATAA 17180 Query 40925 TATGTACT-CTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGA 40983 | ||| | ||||||| | | | || | |||||| || || ||| | | || Sbjct 17179 T-TGTCATACTGATTACTCAGGTCATGGGGTTGATCAACTAGCCGAAGTGATAAAAAAGA 17121 Query 40984 TTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTAC 41043 ||||| |||| | || ||||| || ||| || ||||| |||| | ||| Sbjct 17120 TTAAAGAAAATCCAACTGATCGTCGTATTATCATGTCTGCATGGAATCCAATACAAATAC 17061 Query 41044 ATTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTGAA 41102 ||||||||||| ||||| |||| || ||| || || | || || |||||| Sbjct 17060 CACAAATGGCATTGCCGCCTTGCCATT-GTCTTGTACAATTCTTTGTAGCTAACGGTGAA 17002 Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162 | || |||||| | || ||||| |||| ||| |||||||| || || || ||||| | Sbjct 17001 TTATCGTGTCAACTTTACCAAAGGTCAGCTGATATGGGACTTGGTGTACCATTTAATGTC 16942 Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAA 41212 || |||||||| || | || || ||||||||||| | || ||| |||| Sbjct 16941 GCCAGTTATGCACTCTTAACATACATGATTGCACATTTAACAAATCTAAA 16892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397447610200660