Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1282 176 5e-39
seq1524 170 2e-37
seq314 168 8e-37
seq981 131 2e-25
>seq1282
Length=29674
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || ||||| || | || || || || |||||| | || ||||| | |
Sbjct 29247 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29188
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | ||||| || || || |||||||| || ||||| ||||| |||
Sbjct 29187 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 29128
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| |||| |||||||| |||||||| || |||| ||||| | | ||||| ||
Sbjct 29127 CAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAAC 29068
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| || ||||| ||| |||| |||||||||||||||||
Sbjct 29067 ATCCAAAAGGAGTCTACTCTCCATTTAGTATTGCGTCTTCGCGGTGG 29021
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || ||||| || | || || || || |||||| | || ||||| | |
Sbjct 29475 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29416
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | ||||| || || || |||||||| || ||||| ||||| |||
Sbjct 29415 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 29356
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| |||| |||||||| |||||||| || |||| ||||| | | ||||| ||
Sbjct 29355 CAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAAC 29296
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| || ||||| ||| |||| |||||||||||||||||
Sbjct 29295 ATCCAAAAGGAGTCTACTCTCCATTTAGTATTGCGTCTTCGCGGTGG 29249
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || ||||| || | || || || || |||||| | || || || | |
Sbjct 29019 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTAGAACCTTCT 28960
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| |||| | ||||| || || || |||||||| || ||||| ||||| |||
Sbjct 28959 GATACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGATCAG 28900
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | |||||||||||||| ||||| || |||| |||||| || | ||||| ||
Sbjct 28899 CAACGTTTGATTTTTGCTGGTAAACAACTTGAAGATGGTCGTACATTATCTGACTACAAC 28840
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||| ||||| ||||| ||| |||| || ||||| || || ||
Sbjct 28839 ATCCAAAAAGAATCGACTCTGCATTTAGTATTACGTCTACGTGGAGG 28793
Score = 159 bits (176), Expect = 4e-34
Identities = 165/216 (76%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||| || | || || ||||| |||||| | || || ||| ||
Sbjct 28791 ATGCAGATCTTCGTCAAAACCTTGACTGGTAAGACCATTACTTTGGAAGTCGAGCCATCA 28732
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | || || || || ||||||||||| || ||||||||||| ||
Sbjct 28731 GATACCATTGAAAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAA 28672
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| |||||||||||||||| ||||| ||||||| || || || | || ||||||
Sbjct 28671 CAACGTTTAATTTTTGCTGGTAAACAACTTGAGGATGGACGCACATTATCGGATTATAAT 28612
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621
|||| |||||||| || || ||| | ||| | |||
Sbjct 28611 ATCCAGAAGGAATCTACACTCCATTTGGTCCTTCGT 28576
>seq1524
Length=218836
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| |||||||| || | || || || || |||||| | || || || | |
Sbjct 304 ATGCAAATATTTGTCAAAACTTTGACTGGTAAAACCATTACTTTAGAAGTAGAACCTTCT 245
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | ||||| || || || |||||||| || ||||||||||| |||
Sbjct 244 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAG 185
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | ||||| |||||||||||||| || |||| ||||| | | || || ||
Sbjct 184 CAGCGTTTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGTACATTGTCCGATTACAAC 125
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || |||||||| |||| ||||||||||| |||||
Sbjct 124 ATCCAGAAGGAGTCTACTCTTCACTTAGTATTGCGTCTTCGTGGTGG 78
Score = 105 bits (116), Expect = 8e-18
Identities = 93/116 (80%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 27517 CCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCA 27576
||||| ||||| ||| | || ||||||||||||||||| || |||| |||||| | |
Sbjct 421 CCAGATCAGCAACGTTTGATCTTTGCTGGTAAGCAACTTGAAGATGGTCGTACATTGTCT 362
Query 27577 GACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| || |||| |||||||||||||||||| |||| | ||||| || |||||
Sbjct 361 GACTACAACATCCAGAAGGAATCCACTCTTCATTTAGTACTACGTCTCCGTGGTGG 306
>seq314
Length=315434
Score = 168 bits (186), Expect = 8e-37
Identities = 177/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 27400 ACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG 27459
|| || ||||| |||||||| ||||| ||||| || || || ||||| || || |||||
Sbjct 276030 ACCATCATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATTACCCTCGAAGTTGAA 276089
Query 27460 TCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA 27519
|| |||| || | |||| | ||||| || ||||| || || || || ||||| |||
Sbjct 276090 CCATCCGATACTATCGAAAATGTAAAGGCCAAGATTCAAGATAAAGAAGGCATTCCACCA 276149
Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGAC 27579
|| || || ||| | || ||||| ||||| ||| | || |||| ||| ||| || |||||
Sbjct 276150 GATCAACAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACCTTATCAGAC 276209
Query 27580 TATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || ||||||||||||| || |||||| | || ||||| ||||| |||||
Sbjct 276210 TACAACATCCAAAAGGAATCTACCCTTCATTTGGTGTTGCGACTTCGTGGTGG 276262
>seq981
Length=59034
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || || || | || || || || || || || ||||| || ||
Sbjct 46711 ATGCAGATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTAGAGGTGGAACCATCA 46770
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | |||| |||| || ||||| || || || ||||| ||||| ||||| ||
Sbjct 46771 GATACAATCGAAAATGTGAAAGCCAAAATCCAAGATAAAGAGGGCATTCCACCAGATCAA 46830
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || || |||||||||||| | || |||| ||||| | | ||||| |||
Sbjct 46831 CAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCCGTACGTTGTCCGACTACAAT 46890
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || ||||| | || |||||||| || |||||
Sbjct 46891 ATCCAGAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTCCGTGGTGG 46937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570298052779840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |