Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1282 176 5e-39 seq1524 170 2e-37 seq314 168 8e-37 seq981 131 2e-25 >seq1282 Length=29674 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || | || || || || |||||| | || ||||| | | Sbjct 29247 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29188 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| || || || |||||||| || ||||| ||||| ||| Sbjct 29187 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 29128 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| |||||||| |||||||| || |||| ||||| | | ||||| || Sbjct 29127 CAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAAC 29068 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || ||||| ||| |||| ||||||||||||||||| Sbjct 29067 ATCCAAAAGGAGTCTACTCTCCATTTAGTATTGCGTCTTCGCGGTGG 29021 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || | || || || || |||||| | || ||||| | | Sbjct 29475 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29416 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| || || || |||||||| || ||||| ||||| ||| Sbjct 29415 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 29356 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| |||||||| |||||||| || |||| ||||| | | ||||| || Sbjct 29355 CAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAAC 29296 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || ||||| ||| |||| ||||||||||||||||| Sbjct 29295 ATCCAAAAGGAGTCTACTCTCCATTTAGTATTGCGTCTTCGCGGTGG 29249 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || | || || || || |||||| | || || || | | Sbjct 29019 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTAGAACCTTCT 28960 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | ||||| || || || |||||||| || ||||| ||||| ||| Sbjct 28959 GATACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGATCAG 28900 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | |||||||||||||| ||||| || |||| |||||| || | ||||| || Sbjct 28899 CAACGTTTGATTTTTGCTGGTAAACAACTTGAAGATGGTCGTACATTATCTGACTACAAC 28840 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||| ||||| ||| |||| || ||||| || || || Sbjct 28839 ATCCAAAAAGAATCGACTCTGCATTTAGTATTACGTCTACGTGGAGG 28793 Score = 159 bits (176), Expect = 4e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || | || || ||||| |||||| | || || ||| || Sbjct 28791 ATGCAGATCTTCGTCAAAACCTTGACTGGTAAGACCATTACTTTGGAAGTCGAGCCATCA 28732 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | || || || || ||||||||||| || ||||||||||| || Sbjct 28731 GATACCATTGAAAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAA 28672 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||||||||||||||| ||||| ||||||| || || || | || |||||| Sbjct 28671 CAACGTTTAATTTTTGCTGGTAAACAACTTGAGGATGGACGCACATTATCGGATTATAAT 28612 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 |||| |||||||| || || ||| | ||| | ||| Sbjct 28611 ATCCAGAAGGAATCTACACTCCATTTGGTCCTTCGT 28576 >seq1524 Length=218836 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || | || || || || |||||| | || || || | | Sbjct 304 ATGCAAATATTTGTCAAAACTTTGACTGGTAAAACCATTACTTTAGAAGTAGAACCTTCT 245 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| || || || |||||||| || ||||||||||| ||| Sbjct 244 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAG 185 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| |||||||||||||| || |||| ||||| | | || || || Sbjct 184 CAGCGTTTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGTACATTGTCCGATTACAAC 125 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || |||||||| |||| ||||||||||| ||||| Sbjct 124 ATCCAGAAGGAGTCTACTCTTCACTTAGTATTGCGTCTTCGTGGTGG 78 Score = 105 bits (116), Expect = 8e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 27517 CCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCA 27576 ||||| ||||| ||| | || ||||||||||||||||| || |||| |||||| | | Sbjct 421 CCAGATCAGCAACGTTTGATCTTTGCTGGTAAGCAACTTGAAGATGGTCGTACATTGTCT 362 Query 27577 GACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || |||| |||||||||||||||||| |||| | ||||| || ||||| Sbjct 361 GACTACAACATCCAGAAGGAATCCACTCTTCATTTAGTACTACGTCTCCGTGGTGG 306 >seq314 Length=315434 Score = 168 bits (186), Expect = 8e-37 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 27400 ACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG 27459 || || ||||| |||||||| ||||| ||||| || || || ||||| || || ||||| Sbjct 276030 ACCATCATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATTACCCTCGAAGTTGAA 276089 Query 27460 TCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA 27519 || |||| || | |||| | ||||| || ||||| || || || || ||||| ||| Sbjct 276090 CCATCCGATACTATCGAAAATGTAAAGGCCAAGATTCAAGATAAAGAAGGCATTCCACCA 276149 Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGAC 27579 || || || ||| | || ||||| ||||| ||| | || |||| ||| ||| || ||||| Sbjct 276150 GATCAACAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACCTTATCAGAC 276209 Query 27580 TATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||||||||||| || |||||| | || ||||| ||||| ||||| Sbjct 276210 TACAACATCCAAAAGGAATCTACCCTTCATTTGGTGTTGCGACTTCGTGGTGG 276262 >seq981 Length=59034 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || | || || || || || || || ||||| || || Sbjct 46711 ATGCAGATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTAGAGGTGGAACCATCA 46770 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| |||| || ||||| || || || ||||| ||||| ||||| || Sbjct 46771 GATACAATCGAAAATGTGAAAGCCAAAATCCAAGATAAAGAGGGCATTCCACCAGATCAA 46830 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || || |||||||||||| | || |||| ||||| | | ||||| ||| Sbjct 46831 CAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCCGTACGTTGTCCGACTACAAT 46890 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| | || |||||||| || ||||| Sbjct 46891 ATCCAGAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTCCGTGGTGG 46937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298052779840