Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1282 136 2e-27 seq1524 116 2e-21 seq981 105 4e-18 seq314 105 4e-18 seq599 91.5 9e-14 >seq1282 Length=29674 Score = 136 bits (150), Expect = 2e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||||||||| | ||| | ||||||||||| || ||||| || || |||||||| || Sbjct 28564 GCCGCCTCTCAAACGAAGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATCCGA 28623 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| || | || |||||||||||||| ||||| |||||||| ||||| || || || Sbjct 28624 TAATGTGCGTCCATCCTCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGAGG 28683 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA 34657 | || |||||||| |||| || | ||||||| | ||| || ||| ||| | Sbjct 28684 AATGCCTTCCTTGTCCTGGATC-TTGGCTTTAACGTTTTCAATGGTATCTGATGGCTCGA 28742 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || ||||| || || ||||| || || |||||||| Sbjct 28743 CTTCCAAAGTAATGGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 28791 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| || ||||||||||| ||||||||| ||||| || || || Sbjct 29021 CCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 29080 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||||||||| || || ||||| |||||||| || || || || || Sbjct 29081 AATGTACGTCCATCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGA 29140 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||| || | |||||| | ||| || || || || Sbjct 29141 ATACCTTCCTTGTCTTGGATC-TTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAAC 29199 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || || || ||||| || ||||| ||||| Sbjct 29200 TTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29247 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| || ||||||||||| ||||||||| ||||| || || || Sbjct 29249 CCACCGCGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 29308 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||||||||| || || ||||| |||||||| || || || || || Sbjct 29309 AATGTACGTCCATCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGA 29368 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||| || | |||||| | ||| || || || || Sbjct 29369 ATACCTTCCTTGTCTTGGATC-TTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAAC 29427 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || || || ||||| || ||||| ||||| Sbjct 29428 TTCTAAAGTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29475 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| || || ||||| ||||| || ||||| ||||| || || || | ||| || Sbjct 28802 AGACGTAATACTAAATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGATAATGTACGA 28861 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||||||||| ||||| || ||||| || || || || || | || ||| Sbjct 28862 CCATCTTCAAGTTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCC 28921 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | ||||| | ||| || || || ||||| | || Sbjct 28922 TTGTCTTGGATC-TTGGCCTTAACATTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGT 28980 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || ||||| || ||||| ||||| Sbjct 28981 AATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29019 >seq1524 Length=218836 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| || || || ||||| |||||| || ||||| ||||| || Sbjct 78 CCACCACGAAGACGCAATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAC 137 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||||||||| ||||| || || || |||||||| || || || || Sbjct 138 AATGTACGTCCATCTTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGA 197 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||| || | |||||| | ||| || || || || Sbjct 198 ATACCTTCCTTGTCTTGGATC-TTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCTAC 256 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || |||||||| || || ||||| ||||| || ||||| Sbjct 257 TTCTAAAGTAATGGTTTTACCAGTCAAAGTTTTGACAAATATTTGCAT 304 >seq981 Length=59034 Score = 105 bits (116), Expect = 4e-18 Identities = 161/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || || || |||||| || || || || || || | || || Sbjct 46928 AGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCGGACAACGTACGG 46869 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| ||||| || || || ||||| ||||| || || || | ||||| Sbjct 46868 CCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCT 46809 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | ||| || | ||||| ||| ||||| || | ||| Sbjct 46808 TTATCTTGGAT-TTTGGCTTTCACATTTTCGATTGTATCTGATGGTTCCACCTCTAGGGT 46750 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTG 34714 || |||||||| || || |||||||| || |||||||| |||| || Sbjct 46749 GATGGTTTTACCAGTCAATGTTTTCACGAAGATCTGCATCTTGAGTG 46703 >seq314 Length=315434 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||||||||||||| || || |||||||| ||||| || ||||| Sbjct 276262 CCACCACGAAGTCGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGAT 276203 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||||||||| || ||||| ||||| || || || Sbjct 276202 AAGGTGCGACCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGA 276143 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || || || ||| ||||| |||| | || || || || ||| Sbjct 276142 ATGCCTTCTTTATCTTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACT 276083 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | ||| || |||||||| || | || |||||||| ||||||||| || Sbjct 276082 TCGAGGGTAATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCATGATG 276032 >seq599 Length=5473 Score = 91.5 bits (100), Expect = 9e-14 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| || | |||||| |||||||| ||||| || |||||||||||||||||||| Sbjct 113 GTTGCCACCACGAAGACGTAACACCAAGTGGAGGGTAGATTCCTTTTGAATGTTATAATC 54 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTT 34588 || | ||| || | || || | ||||||||| || || |||||||| |||| Sbjct 53 GGACAATGTACGACCATCCTCTAATTGTTTACCAGCGAAGATTAAACGTTGTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314722956451556