Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq314 168 6e-37
seq981 143 2e-29
seq1524 136 3e-27
seq1282 127 2e-24
seq1502 98.7 9e-16
seq644 89.7 4e-13
seq599 84.2 2e-11
>seq314
Length=315434
Score = 168 bits (186), Expect = 6e-37
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| ||||| || ||||| || || || | ||||| || ||||| ||||| ||
Sbjct 276035 CATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATTACCCTCGAAGTTGAACCATC 276094
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || || | || || || |||||||| ||||||||||| ||||| |||||
Sbjct 276095 CGATACTATCGAAAATGTAAAGGCCAAGATTCAAGATAAAGAAGGCATTCCACCAGATCA 276154
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| ||||| || | ||||| |||||||||||||| || ||| | || || |||||
Sbjct 276155 ACAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACCTTATCAGACTACAA 276214
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||| |||||||| || ||| | |||||||| ||||| | || |||||
Sbjct 276215 CATCCAAAAGGAATCTACCCTTCATTTGGTGTTGCGACTTCGTGGTGG 276262
>seq981
Length=59034
Score = 143 bits (158), Expect = 2e-29
Identities = 172/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| |||| || || | || || || || |||||||| ||
Sbjct 46711 ATGCAGATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTAGAGGTGGAACCATCA 46770
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || ||| ||||| ||||| ||||| ||||| ||||| ||||||
Sbjct 46771 GATACAATCGAAAATGTGAAAGCCAAAATCCAAGATAAAGAGGGCATTCCACCAGATCAA 46830
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166
|| ||||| || | ||| || || ||||||||||| | || |||| ||||| |||||
Sbjct 46831 CAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGA-TGGCCGTACGTTGTCCGACTACAA 46889
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| ||| | || ||||| |||||| | || ||||| ||
Sbjct 46890 TATCCAGAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTCCGTGGTGGTAT 46940
>seq1524
Length=218836
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| |||||||| |||||| |||| || || | |||||| | ||||| ||||| ||
Sbjct 304 ATGCAAATATTTGTCAAAACTTTGACTGGTAAAACCATTACTTTAGAAGTAGAACCTTCT 245
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || || || || |||||||| ||||| || || || |||||
Sbjct 244 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAG 185
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||||| || | ||| || || ||| | ||||| | || | ||||||||||||
Sbjct 184 CAGCGTTTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGTACATTGTCCGATTACAAC 125
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| || | || || || |||||| | || ||||| ||
Sbjct 124 ATCCAGAAGGAGTCTACTCTTCACTTAGTATTGCGTCTTCGTGGTGGTAT 75
>seq1282
Length=29674
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || |||||| |||| || || | |||||| | ||||| ||||| ||
Sbjct 29247 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29188
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || || || || |||||||| ||||| || || || |||||
Sbjct 29187 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 29128
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| |||||||| | || ||||| ||| | ||||| | || | || || ||||||
Sbjct 29127 CAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAAC 29068
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| || | ||||| || |||||| | || ||||| ||
Sbjct 29067 ATCCAAAAGGAGTCTACTCTCCATTTAGTATTGCGTCTTCGCGGTGGTAT 29018
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || |||||| |||| || || | |||||| | ||||| ||||| ||
Sbjct 29475 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29416
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || || || || |||||||| ||||| || || || |||||
Sbjct 29415 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 29356
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| |||||||| | || ||||| ||| | ||||| | || | || || ||||||
Sbjct 29355 CAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAAC 29296
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| || | ||||| || |||||| | || ||||| ||
Sbjct 29295 ATCCAAAAGGAGTCTACTCTCCATTTAGTATTGCGTCTTCGCGGTGGTAT 29246
>seq1502
Length=345191
Score = 98.7 bits (108), Expect = 9e-16
Identities = 135/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 49779 GGGACTAGAAGGTTTGGTACTAAAACCGATCAATTCTGTATACGCACCCGGTAAAAGACA 49838
||| || ||||| | || || ||| || ||| | | || | ||||||||| ||||
Sbjct 190738 GGGTCTCGAAGGACTCGTTCTTAAAAACATAAATGGTATTTATGAGCCCGGTAAACGACA 190679
Query 49839 TTGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGCCATGGCCGATAGCGTTGATTT 49898
|||||| ||| |||||||||| || ||||||||||| ||||| ||| | ||| |
Sbjct 190678 TTGGTTAAAAGTTAAAAAAGATTATTTGTGCGATGGTAAAATGGCTGATTCAGCAGATCT 190619
Query 49899 GGTGGTTTTGGGTGCATGGTACGGTTCTGGAAAAAAGGGTGGCTTCTTGTCTACATTTTT 49958
|| ||| | |||| |||||| ||| | || ||||| || || | || | ||||||
Sbjct 190618 AGTTGTTATCGGTGGATGGTATGGTACGGGTAAAAAAGGAGGTATGCTGAGCATATTTTT 190559
Query 49959 GATGGGATG 49967
||||||||
Sbjct 190558 AATGGGATG 190550
>seq644
Length=264193
Score = 89.7 bits (98), Expect = 4e-13
Identities = 110/148 (74%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 135506 GAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCT 135565
||||| || ||||| |||| | | || ||||||||||| ||||||||||| || ||| ||
Sbjct 215105 GAAGGAAAGATGCATGGATATCTTCGTATGTATTGGGCTAAAAAGATATTAGAGTGGACT 215164
Query 135566 GCATCGCCTGCAGAGGCGCT-ACAACACGCAATATTTTTTAATGATTACTACAGTTTAGA 135624
|| | || | || || || |||| | |||| | |||| ||| || |||||||||
Sbjct 215165 GCCACTCCCGAGGAAGCTCTGGGAACAAG-TATATATCTTAACGATCGCTTCAGTTTAGA 215223
Query 135625 TGGACGCGATTCAAATGGCTACGTAGGT 135652
||| || ||| |||| || || || |||
Sbjct 215224 TGGCCGTGATCCAAACGGTTATGTTGGT 215251
>seq599
Length=5473
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165
|||| |||||||| | ||| || |||||||| || || || || | |||||||| |
Sbjct 1 AACAACGTTTAATCTTCGCTGGTAAACAATTAGAGGATGGTCGTACATTGTCCGATTATA 60
Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216
||||||||||||| || ||| | || ||||| || ||| | || |||||||
Sbjct 61 ACATTCAAAAGGAATCTACCCTCCACTTGGTGTTACGTCTTCGTGGTGGCA 111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434908984016640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |