Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq314 168 6e-37 seq981 143 2e-29 seq1524 136 3e-27 seq1282 127 2e-24 seq1502 98.7 9e-16 seq644 89.7 4e-13 seq599 84.2 2e-11 >seq314 Length=315434 Score = 168 bits (186), Expect = 6e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||| || || || | ||||| || ||||| ||||| || Sbjct 276035 CATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATTACCCTCGAAGTTGAACCATC 276094 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || || |||||||| ||||||||||| ||||| ||||| Sbjct 276095 CGATACTATCGAAAATGTAAAGGCCAAGATTCAAGATAAAGAAGGCATTCCACCAGATCA 276154 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||||| || | ||||| |||||||||||||| || ||| | || || ||||| Sbjct 276155 ACAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACCTTATCAGACTACAA 276214 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| |||||||| || ||| | |||||||| ||||| | || ||||| Sbjct 276215 CATCCAAAAGGAATCTACCCTTCATTTGGTGTTGCGACTTCGTGGTGG 276262 >seq981 Length=59034 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||| || || | || || || || |||||||| || Sbjct 46711 ATGCAGATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTAGAGGTGGAACCATCA 46770 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||||| ||||| ||||| ||||| ||||| |||||| Sbjct 46771 GATACAATCGAAAATGTGAAAGCCAAAATCCAAGATAAAGAGGGCATTCCACCAGATCAA 46830 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || ||||| || | ||| || || ||||||||||| | || |||| ||||| ||||| Sbjct 46831 CAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGA-TGGCCGTACGTTGTCCGACTACAA 46889 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| |||||| | || ||||| || Sbjct 46890 TATCCAGAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTCCGTGGTGGTAT 46940 >seq1524 Length=218836 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| |||||| |||| || || | |||||| | ||||| ||||| || Sbjct 304 ATGCAAATATTTGTCAAAACTTTGACTGGTAAAACCATTACTTTAGAAGTAGAACCTTCT 245 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || || |||||||| ||||| || || || ||||| Sbjct 244 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAG 185 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || || ||| | ||||| | || | |||||||||||| Sbjct 184 CAGCGTTTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGTACATTGTCCGATTACAAC 125 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || || || |||||| | || ||||| || Sbjct 124 ATCCAGAAGGAGTCTACTCTTCACTTAGTATTGCGTCTTCGTGGTGGTAT 75 >seq1282 Length=29674 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||| |||| || || | |||||| | ||||| ||||| || Sbjct 29247 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29188 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || || |||||||| ||||| || || || ||||| Sbjct 29187 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 29128 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || ||||| ||| | ||||| | || | || || |||||| Sbjct 29127 CAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAAC 29068 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | ||||| || |||||| | || ||||| || Sbjct 29067 ATCCAAAAGGAGTCTACTCTCCATTTAGTATTGCGTCTTCGCGGTGGTAT 29018 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||| |||| || || | |||||| | ||||| ||||| || Sbjct 29475 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCT 29416 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || || |||||||| ||||| || || || ||||| Sbjct 29415 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 29356 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || ||||| ||| | ||||| | || | || || |||||| Sbjct 29355 CAACGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAAC 29296 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | ||||| || |||||| | || ||||| || Sbjct 29295 ATCCAAAAGGAGTCTACTCTCCATTTAGTATTGCGTCTTCGCGGTGGTAT 29246 >seq1502 Length=345191 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 49779 GGGACTAGAAGGTTTGGTACTAAAACCGATCAATTCTGTATACGCACCCGGTAAAAGACA 49838 ||| || ||||| | || || ||| || ||| | | || | ||||||||| |||| Sbjct 190738 GGGTCTCGAAGGACTCGTTCTTAAAAACATAAATGGTATTTATGAGCCCGGTAAACGACA 190679 Query 49839 TTGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGCCATGGCCGATAGCGTTGATTT 49898 |||||| ||| |||||||||| || ||||||||||| ||||| ||| | ||| | Sbjct 190678 TTGGTTAAAAGTTAAAAAAGATTATTTGTGCGATGGTAAAATGGCTGATTCAGCAGATCT 190619 Query 49899 GGTGGTTTTGGGTGCATGGTACGGTTCTGGAAAAAAGGGTGGCTTCTTGTCTACATTTTT 49958 || ||| | |||| |||||| ||| | || ||||| || || | || | |||||| Sbjct 190618 AGTTGTTATCGGTGGATGGTATGGTACGGGTAAAAAAGGAGGTATGCTGAGCATATTTTT 190559 Query 49959 GATGGGATG 49967 |||||||| Sbjct 190558 AATGGGATG 190550 >seq644 Length=264193 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 135506 GAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCT 135565 ||||| || ||||| |||| | | || ||||||||||| ||||||||||| || ||| || Sbjct 215105 GAAGGAAAGATGCATGGATATCTTCGTATGTATTGGGCTAAAAAGATATTAGAGTGGACT 215164 Query 135566 GCATCGCCTGCAGAGGCGCT-ACAACACGCAATATTTTTTAATGATTACTACAGTTTAGA 135624 || | || | || || || |||| | |||| | |||| ||| || ||||||||| Sbjct 215165 GCCACTCCCGAGGAAGCTCTGGGAACAAG-TATATATCTTAACGATCGCTTCAGTTTAGA 215223 Query 135625 TGGACGCGATTCAAATGGCTACGTAGGT 135652 ||| || ||| |||| || || || ||| Sbjct 215224 TGGCCGTGATCCAAACGGTTATGTTGGT 215251 >seq599 Length=5473 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 |||| |||||||| | ||| || |||||||| || || || || | |||||||| | Sbjct 1 AACAACGTTTAATCTTCGCTGGTAAACAATTAGAGGATGGTCGTACATTGTCCGATTATA 60 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||||||||||||| || ||| | || ||||| || ||| | || ||||||| Sbjct 61 ACATTCAAAAGGAATCTACCCTCCACTTGGTGTTACGTCTTCGTGGTGGCA 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434908984016640