Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq314 96.9 2e-15 seq1282 93.3 3e-14 seq1524 84.2 2e-11 >seq314 Length=315434 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| |||||||| || ||| ||||| | || || ||| || Sbjct 276036 ATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATTACCCTCGAAGTTGAACCATCC 276095 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || || || || || |||||||| |||| || | Sbjct 276096 GATACTATCGAAAAT--GTAAAGGCCAAGATTCAAGATAAAGAAGGCATTCCACCAGATC 276153 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || || |||||||| ||||||||||| || | |||| ||| || || |||| Sbjct 276154 AACAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGTCGCACCTTATCAGACTACA 276213 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || || | |||||||| ||||| | ||||| || Sbjct 276214 ACATCCAAAAGGAATCTACCCTTCATTTGGTGTTGCGACTTCGTGGTGG 276262 >seq1282 Length=29674 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || |||||| | ||||| ||| ||||| | || || ||| | Sbjct 29019 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTAGAACCTTCT 28960 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || || || || ||||| |||||| |||| || | Sbjct 28959 GATACCATTGAAAAT--GTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGATC 28902 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || |||||||| || |||||| | || || | || | || || || |||| Sbjct 28901 AGCAACGTTTGATTTTTGCTGGTAAACAACTTGAAGATGGTCGTACATTATCTGACTACA 28842 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| ||||||| || || ||| | ||||| || Sbjct 28841 ACATCCAAAAAGAATCGACTCTGCATTTAGTATTACGTCTACGTGGAGG 28793 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| |||| || |||||||| ||||| ||||| || || ||| | || Sbjct 29154 GACAAGGAAGGTATTCCCCCAGATCAGCAACGTTTAATCTTTGCTGGCAAGCAACTTGAA 29095 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | ||||| || |||||||||||||| ||| ||| | ||||| || ||| Sbjct 29094 GATGGACGTACATTGTCTGACTACAACATCCAAAAGGAGTCTACTCTCCATTTAGTATTG 29035 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 29034 CGTCTTCGCGGTGG 29021 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| |||| || |||||||| ||||| ||||| || || ||| | || Sbjct 29382 GACAAGGAAGGTATTCCCCCAGATCAGCAACGTTTAATCTTTGCTGGCAAGCAACTTGAA 29323 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | ||||| || |||||||||||||| ||| ||| | ||||| || ||| Sbjct 29322 GATGGACGTACATTGTCTGACTACAACATCCAAAAGGAGTCTACTCTCCATTTAGTATTG 29263 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 29262 CGTCTTCGCGGTGG 29249 >seq1524 Length=218836 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| |||| || ||||| || || ||||| || || || ||| | || Sbjct 211 GACAAGGAAGGTATTCCTCCAGATCAGCAGCGTTTGATTTTCGCTGGTAAGCAACTTGAA 152 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||||||||||||||| || ||| ||| | || || || ||| Sbjct 151 GATGGACGTACATTGTCCGATTACAACATCCAGAAGGAGTCTACTCTTCACTTAGTATTG 92 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 91 CGTCTTCGTGGTGG 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355854888189564