Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1282 136 9e-27 seq1524 134 3e-26 seq314 131 4e-25 >seq1282 Length=29674 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||| ||||| ||||||||||| || || | | || | ||||||||| || ||| Sbjct 29045 TGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTACGTCCATCTTCAAGTTGC 29104 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| | ||||| || || || |||| ||||||||||| |||||||| Sbjct 29105 TTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTG 29164 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || |||||||| ||||| ||||| |||||| || | ||| || || ||||| || Sbjct 29165 GCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATGGTTTTTCCAGTC 29224 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||| || || || | ||||| Sbjct 29225 AAAGTTTTGACGAAAATTTGCAT 29247 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||| ||||| ||||||||||| || || | | || | ||||||||| || ||| Sbjct 29273 TGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTACGTCCATCTTCAAGTTGC 29332 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| | ||||| || || || |||| ||||||||||| |||||||| Sbjct 29333 TTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTG 29392 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || |||||||| ||||| ||||| |||||| || | ||| || || ||||| || Sbjct 29393 GCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATGGTTTTTCCAGTC 29452 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||| || || || | ||||| Sbjct 29453 AAAGTTTTGACGAAAATTTGCAT 29475 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || || || || || ||||| |||||||||| | || | |||||| Sbjct 28580 AGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATCCGATAATGTGCGTCCATCC 28639 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || || || | |||||||| || ||||||| |||||||||||| Sbjct 28640 TCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCC 28699 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| |||||||| ||||| || || || || || | ||| || ||| Sbjct 28700 TGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGTC 28759 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | || || || || | |||||| Sbjct 28760 TTACCAGTCAAGGTTTTGACGAAGATCTGCAT 28791 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||| || |||||||||||||| || || | | || | |||||||| || || Sbjct 28817 TGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGATAATGTACGACCATCTTCAAGTTGT 28876 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || | ||||| || || || |||| ||||||||||| |||||||| Sbjct 28877 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGGATCTTG 28936 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| ||||| ||||| ||| || || | ||| || || ||||| || Sbjct 28937 GCCTTAACATTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGTTTTTCCAGTC 28996 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||| || || || | ||||| Sbjct 28997 AAAGTTTTGACGAAAATTTGCAT 29019 >seq1524 Length=218836 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || | ||||||||| ||||| || |||||||| ||||| | | || Sbjct 83 ACGAAGACGCAATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGACAATGT 142 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||| || ||||| || ||||| || | || || || || ||||||| || Sbjct 143 ACGTCCATCTTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACC 202 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| |||||||| || |||||||| ||||| ||||| ||| || || | Sbjct 203 TTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCTACTTCTAA 262 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || || | ||| || ||||| | ||||| Sbjct 263 AGTAATGGTTTTACCAGTCAAAGTTTTGACAAATATTTGCAT 304 >seq314 Length=315434 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | || | ||||| || || || ||||||||||| || || | | ||| Sbjct 276257 ACGAAGTCGCAACACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGT 276198 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| || || || || ||||| | |||||||| || || |||| || Sbjct 276197 GCGACCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCC 276138 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || || || ||||| || || |||||||| || || || |||||| ||||| Sbjct 276137 TTCTTTATCTTGAATCTTGGCCTTTACATTTTCGATAGTATCGGATGGTTCAACTTCGAG 276078 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| |||||||| ||||| | |||||| Sbjct 276077 GGTAATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCAT 276036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159126276968180