Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1282 156 1e-32 seq1524 152 1e-31 seq981 143 6e-29 seq1657 84.2 5e-11 >seq1282 Length=29674 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | |||||||| || || ||||||| ||||| || | ||| || Sbjct 29027 CGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTA 29086 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || ||||| ||||| ||||| | ||||| || || || ||||||||| Sbjct 29087 CGTCCATCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCT 29146 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| || ||| ||||| || || | ||| || ||||| Sbjct 29147 TCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAA 29206 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || ||||||||||| | ||| | |||||| Sbjct 29207 GTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29247 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | |||||||| || || ||||||| ||||| || | ||| || Sbjct 29255 CGAAGACGCAATACTAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTA 29314 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || ||||| ||||| ||||| | ||||| || || || ||||||||| Sbjct 29315 CGTCCATCTTCAAGTTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCT 29374 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| || ||| ||||| || || | ||| || ||||| Sbjct 29375 TCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAA 29434 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || ||||||||||| | ||| | |||||| Sbjct 29435 GTAATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 29475 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| ||||||||||||| ||||| || | || || | |||||||| || || Sbjct 28817 TGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGATAATGTACGACCATCTTCAAGTTGT 28876 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| || || | ||||| || || || |||||||||||||||||||||||||| Sbjct 28877 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGGATCTTG 28936 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||| ||||| || || | ||| || ||||| || || || || || ||| Sbjct 28937 GCCTTAACATTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGTTTTTCCAGTC 28996 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 |||||||| | ||| | |||||| Sbjct 28997 AAAGTTTTGACGAAAATTTGCAT 29019 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||||| || ||||| || |||| ||| ||||| | || || | ||||| Sbjct 28580 AGGACCAAATGGAGTGTAGATTCCTTCTGGATATTATAATCCGATAATGTGCGTCCATCC 28639 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| || || | |||||||| || || ||||| ||||||||||| Sbjct 28640 TCAAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCC 28699 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || || ||| ||||| ||||| | || || || || || || ||| Sbjct 28700 TGGATCTTGGCTTTAACGTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGTC 28759 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| ||||| | ||| | ||||| Sbjct 28760 TTACCAGTCAAGGTTTTGACGAAGATCTGCAT 28791 >seq1524 Length=218836 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| ||||| || || || |||| |||||||||| ||| || Sbjct 83 ACGAAGACGCAATACTAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGACAATGT 142 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| |||||||| || | || || || || || |||||||| Sbjct 143 ACGTCCATCTTCAAGTTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACC 202 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| ||| || ||| ||||| || || | ||| || ||||| Sbjct 203 TTCCTTGTCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCAGAAGGTTCTACTTCTAA 262 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || ||||||||||| | || | |||||| Sbjct 263 AGTAATGGTTTTACCAGTCAAAGTTTTGACAAATATTTGCAT 304 >seq981 Length=59034 Score = 143 bits (158), Expect = 6e-29 Identities = 169/226 (75%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || | ||| || || || || || |||| |||||| |||| ||| || Sbjct 46932 ACGGAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCGGACAACGT 46873 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| ||||||||||| | |||||||| || || ||||| || Sbjct 46872 ACGGCCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGAATGCC 46813 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 || || |||||||| ||| || |||||| |||||| || ||||| | |||||| |||| Sbjct 46812 CTCTTTATCTTGGAT-TTTGGCTTTCACATTTTCGATTGTATCTGATGGTTCCACCTCTA 46754 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || || ||||| ||||| | ||| | ||||| || Sbjct 46753 GGGTGATGGTTTTACCAGTCAATGTTTTCACGAAGATCTGCATCTT 46708 >seq1657 Length=82118 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/132 (76%), Gaps = 3/132 (2%) Strand=Plus/Minus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGAT 225647 ||||||||||| || || || |||||||| |||||||| ||| || |||||| ||| || Sbjct 82113 CGTTGTTGGTCTGGTGGGATTCCTTCCTTATCTTGGAT-TTTGGCTTTCACATTTTCAAT 82055 Query 225648 GGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACAC 225707 || || || | || || || | ||||| || ||||| ||||| ||||| | ||| | Sbjct 82054 CGTATCGGATGGCTCAACCTCCAGGGTGATAGTTTTGCCAGTCAATGTTTTAACGAAGAT 81995 Query 225708 TTGCAT-TTTAT 225718 ||||| ||||| Sbjct 81994 CTGCATCTTTAT 81983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192504736242008