Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28]
1,732 sequences; 98,759,061 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq1361 232 6e-56
>seq1361
Length=478162
Score = 232 bits (256), Expect = 6e-56
Identities = 369/521 (71%), Gaps = 10/521 (2%)
Strand=Plus/Minus
Query 4277 CTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATT 4336
|||||| |||||||| |||||||||||||| || || | ||||||||| ||| |||||
Sbjct 113236 CTTTTCAAAGAAATTCGTTTTGCCTTCTAATGATATTTGTTCCATAAATGGAAATGGATT 113177
Query 4337 AGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTC 4396
|| | || || ||| ||| | | ||||||| || || |||||||||||
Sbjct 113176 TGTCGAATTATATATTTTCTCAATACCCAATTCACCAAGCAAACGATCTGCTACAAATTC 113117
Query 4397 TATATACTGGCTCATGAGTTCGCAGTTAATTCC-AATTAATCTCACAGGTAGCGCGTATG 4455
||| || || ||| | | || || || || || ||||| |||||||| | | ||
Sbjct 113116 TATGTATTGTGACATTAAATTACAATTCATACCTAACAAATCT-ACAGGTAGTGACTCTG 113058
Query 4456 TCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAG 4515
| ||||| ||||||||||| | ||||| ||| |||||| ||| | || || |
Sbjct 113057 TTAAAAATTCTTGTTCTATTTTAACGGCGTCTCGGATTATTTCTACAACACAGTCCTTTG 112998
Query 4516 ATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGT 4575
|||||| | ||| || | |||| |||||| ||||| |||||||| |||||||| |
Sbjct 112997 TTGGTTTTTGTACCAAATGCTTGAACATTAAACAAGCAAAGTCACAATGTAAACCTTCAT 112938
Query 4576 CTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCC 4635
| | ||| | |||||| ||||| || | ||| |||||||| || | || || ||||
Sbjct 112937 CGCGTGAAATTAATTCGTTTGAAAAGGTCAGTCCCGGCATTAAGCCACGTTTCTTTAGCC 112878
Query 4636 AAAATATAGCGGCAAA--TGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTAC 4693
||||||| | ||||| || | | |||| ||||| ||||| || || ||||| || |
Sbjct 112877 AAAATATTGATGCAAAACTGCCACTGAAA--AATATACCTTCAACAGCCGCAAATGCAAT 112820
Query 4694 TAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTA-ATCCATTTTAATGCCCAGTTAGCT 4751
|| || ||||| | |||| ||| ||| | ||||| || || ||||||| ||
Sbjct 112819 TATACGTTCACCGAATGTTGCTG--TTTTACTTGATATCCAATTCAACGCCCAGTCTGCC 112762
Query 4752 TTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792
|| ||||| |||||||| ||||| | || || ||||||||
Sbjct 112761 TTCTTCTTTACGCACGGCATTGTTTCAATTGCATTAAATAA 112721
Score = 190 bits (210), Expect = 2e-43
Identities = 218/293 (74%), Gaps = 0/293 (0%)
Strand=Plus/Minus
Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898
|| |||||||| |||||||||||||| |||||||| || || || || ||||||||||||
Sbjct 112613 CTGTACATTTCTGAATGTATATTTTCAATAGCAATTTGGAAGCCATAGAAGCATCTAGCT 112554
Query 4899 TCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958
|| || ||||| ||||| | | ||||| ||| ||||| ||||| || || ||||| ||
Sbjct 112553 TCAGTAACTTGCACTTCCTGGCTAAATCGTTCAACTAAATTTTCATTAACAATACCATCG 112494
Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTT 5018
||||||||||| || | ||| || || ||||| || ||| | | || |||||
Sbjct 112493 GATGCTGCAAAAAATGCAAGAACGTGTGAGATAAAAAACCTTTCTTGATCGTTCAGTTTC 112434
Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078
| ||| | | || || | | ||| | |||||||| || ||||| ||||| |||||
Sbjct 112433 TGCCAATCCTGTAAGTCATGCGATAAGTTTACTTCTTCTACTGTCCAGAACGATGCTTCA 112374
Query 5079 GCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131
|| ||||| ||||| ||| || || |||| ||||| |||| ||| |||||
Sbjct 112373 GCCTTTTTATACATTTGCCATATGTCTTGATATTGAATTGGAAATATAACAAA 112321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427040585516756
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |