Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1361 232 6e-56 >seq1361 Length=478162 Score = 232 bits (256), Expect = 6e-56 Identities = 369/521 (71%), Gaps = 10/521 (2%) Strand=Plus/Minus Query 4277 CTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATT 4336 |||||| |||||||| |||||||||||||| || || | ||||||||| ||| ||||| Sbjct 113236 CTTTTCAAAGAAATTCGTTTTGCCTTCTAATGATATTTGTTCCATAAATGGAAATGGATT 113177 Query 4337 AGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTC 4396 || | || || ||| ||| | | ||||||| || || ||||||||||| Sbjct 113176 TGTCGAATTATATATTTTCTCAATACCCAATTCACCAAGCAAACGATCTGCTACAAATTC 113117 Query 4397 TATATACTGGCTCATGAGTTCGCAGTTAATTCC-AATTAATCTCACAGGTAGCGCGTATG 4455 ||| || || ||| | | || || || || || ||||| |||||||| | | || Sbjct 113116 TATGTATTGTGACATTAAATTACAATTCATACCTAACAAATCT-ACAGGTAGTGACTCTG 113058 Query 4456 TCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAG 4515 | ||||| ||||||||||| | ||||| ||| |||||| ||| | || || | Sbjct 113057 TTAAAAATTCTTGTTCTATTTTAACGGCGTCTCGGATTATTTCTACAACACAGTCCTTTG 112998 Query 4516 ATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGT 4575 |||||| | ||| || | |||| |||||| ||||| |||||||| |||||||| | Sbjct 112997 TTGGTTTTTGTACCAAATGCTTGAACATTAAACAAGCAAAGTCACAATGTAAACCTTCAT 112938 Query 4576 CTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCC 4635 | | ||| | |||||| ||||| || | ||| |||||||| || | || || |||| Sbjct 112937 CGCGTGAAATTAATTCGTTTGAAAAGGTCAGTCCCGGCATTAAGCCACGTTTCTTTAGCC 112878 Query 4636 AAAATATAGCGGCAAA--TGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTAC 4693 ||||||| | ||||| || | | |||| ||||| ||||| || || ||||| || | Sbjct 112877 AAAATATTGATGCAAAACTGCCACTGAAA--AATATACCTTCAACAGCCGCAAATGCAAT 112820 Query 4694 TAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTA-ATCCATTTTAATGCCCAGTTAGCT 4751 || || ||||| | |||| ||| ||| | ||||| || || ||||||| || Sbjct 112819 TATACGTTCACCGAATGTTGCTG--TTTTACTTGATATCCAATTCAACGCCCAGTCTGCC 112762 Query 4752 TTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792 || ||||| |||||||| ||||| | || || |||||||| Sbjct 112761 TTCTTCTTTACGCACGGCATTGTTTCAATTGCATTAAATAA 112721 Score = 190 bits (210), Expect = 2e-43 Identities = 218/293 (74%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898 || |||||||| |||||||||||||| |||||||| || || || || |||||||||||| Sbjct 112613 CTGTACATTTCTGAATGTATATTTTCAATAGCAATTTGGAAGCCATAGAAGCATCTAGCT 112554 Query 4899 TCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958 || || ||||| ||||| | | ||||| ||| ||||| ||||| || || ||||| || Sbjct 112553 TCAGTAACTTGCACTTCCTGGCTAAATCGTTCAACTAAATTTTCATTAACAATACCATCG 112494 Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTT 5018 ||||||||||| || | ||| || || ||||| || ||| | | || ||||| Sbjct 112493 GATGCTGCAAAAAATGCAAGAACGTGTGAGATAAAAAACCTTTCTTGATCGTTCAGTTTC 112434 Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078 | ||| | | || || | | ||| | |||||||| || ||||| ||||| ||||| Sbjct 112433 TGCCAATCCTGTAAGTCATGCGATAAGTTTACTTCTTCTACTGTCCAGAACGATGCTTCA 112374 Query 5079 GCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 || ||||| ||||| ||| || || |||| ||||| |||| ||| ||||| Sbjct 112373 GCCTTTTTATACATTTGCCATATGTCTTGATATTGAATTGGAAATATAACAAA 112321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427040585516756