Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_031098.1 Length=40749 Score E Sequences producing significant alignments: (Bits) Value seq1240 583 2e-162 >seq1240 Length=38001 Score = 583 bits (646), Expect = 2e-162 Identities = 864/1214 (71%), Gaps = 24/1214 (2%) Strand=Plus/Plus Query 477 AAAAGATGCCGAACATCAATCCAACACTGAATGTGCCTCAGGCTAACTTCCTACAATTAC 536 |||||||||| | |||||||| | ||||| | |||||| |||| || |||| | | Sbjct 952 AAAAGATGCCTGAAATCAATCCGTCTTTGAATATTCCTCAGTCTAAATTTCTACTGATGC 1011 Query 537 CAAATAAATTTAGAGCGTTCGTTGCTGGGTTTGGTTCAGGTAAAACATGGGTTGGTTGTT 596 | || || ||| | || || || || || |||||| |||||||||||||| || |||| Sbjct 1012 CTAACAAGTTTCGGGCATTTGTGGCGGGATTTGGTAGTGGTAAAACATGGGTCGGATGTT 1071 Query 597 CAAGTCTTTGTGATAAGTCT---TGGTCTTTCCCTAAAGTTCCGTTGGGTTACTTTGCTC 653 || || ||||| | ||||| ||| ||| ||||||| ||| | || ||||| || | Sbjct 1072 CA--TCATTGTG-TCAGTCTGCATGGGCTTATCCTAAAGCACCGCTTGGATACTTCGCAC 1128 Query 654 CAACGTATCCGCAGATCCGAGATATCTTTTTCCCTACGATTGATGAAGTAGCTTTCGATT 713 | || ||||||||||| || ||||| || || || |||||||| ||||| || ||||| | Sbjct 1129 CGACCTATCCGCAGATTCGGGATATTTTCTTTCCAACGATTGAGGAAGTGGCATTCGACT 1188 Query 714 GGGGATTGAAGACAAAGATCTATGAATCTAACAAAGAAGTTGATCTTTACTATGGCCGCC 773 |||| || || | | || | ||||| ||||| ||||| ||| |||| || || | | Sbjct 1189 GGGGCTTAAATGTAGACATTAAAGAATCCAACAAGGAAGTCGATGTTTATTACGGTAGTC 1248 Query 774 AATATCGAAGCACAATTATTTGCCGATCAATGGAAAAGCCCAATACTATTGTAGGTTTTA 833 | || || | || || |||||||| || |||||||| || | || ||||| || |||| Sbjct 1249 AGTACCGGACAACCATCATTTGCCGCTCGATGGAAAAACCGCAGACCATTGTCGGGTTTA 1308 Query 834 AGATTGGTCATGCGC--TGATTGATGAGCTTGATGTGATGACAAAGGTCAAGGCTCAACA 891 || | | | |||| | | ||||| ||||| ||||||| |||| || || || Sbjct 1309 AGGTA--TTAAGCGCATTAGTCGATGAACTTGACGTGATGAACAAGGATAAAGCACAGGT 1366 Query 892 AGCTTGGCGTAAGATCATTGCTCGTATGCGATATAAACAAGCTGGTTTGTTGAACGGTAT 951 | | |||||||| ||||||||||||||||| || | | | ||| || ||| | || Sbjct 1367 ATCATGGCGTAAAATCATTGCTCGTATGCGTTACACCTACCCCGGTGCTTTAAACCGGAT 1426 Query 952 TGATGTTGCAACAACGCCAGAGGGCTTTAAGTTCACTCATGAGCAATTTGTCAAAGAAGC 1011 ||| ||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||| Sbjct 1427 TGACGTTGCAACAACACCAGAGGGCTTCAAGTTCACTTATGAGCAGTTTGTCAAAGAAGC 1486 Query 1012 AAACCAAAGCGAGGCTAAGCGCGCTCTATATGGAATGATTCAAGCTTCCACCTATGATAA 1071 || ||| | || |||||| |||| || ||| | |||||||| || ||||| || Sbjct 1487 CAATTCAAGTCCGCAGAAACGCGCTTTATACGGCATGGTGCAAGCTTCGACTTATGACAA 1546 Query 1072 TGAAGCCAATCTTCCTGATGACTACATTGCATCATTGTTTGAGTCTTACCCACCTCAATT 1131 ||| || | || || || || | ||| | || || |||||||| ||||| Sbjct 1547 TGAGAAGAACTTGCCGCCGGATTATATCGAATCGCTTCGGGAATCCTACCCACCGCAATT 1606 Query 1132 GATTTCAGCCTACTTAAAAGGGCAATTCGTAAATTTAACGAGTGGGGCTGTATATCCAGA 1191 |||| |||||| | ||| || || || || || || ||||| || || ||||| || Sbjct 1607 GATTGAAGCCTATCTGCGAGGTCAGTTTGTCAACTTGACCAGTGGCGCGGTTTATCCTGA 1666 Query 1192 CTTCGACCGGACCTTAAACCATACAGATGAGGAAATAAGACCTAATGAGGCTTTACTCAT 1251 || || |||| | || ||||| |||| ||||| | || ||| ||| || || Sbjct 1667 TTTTGATCGGAAGCTGAATCATACCGATGCTGAAATCCAATCTGGTGAACATTTGCTGAT 1726 Query 1252 TGGTATGGACTTCAACGTCTTGAAGATGGCAGCTGTTGTTTATGTGATTCGAGATGGCAA 1311 ||| ||||| || ||||| |||| ||||| || | |||||||||||||| | || Sbjct 1727 TGGCATGGATTTTAACGTGCTGAAAATGGCCGCAGCGGTTTATGTGATTCGCCAGGGTGT 1786 Query 1312 GCCAAGAGCT-TTAGATGAGTTGGTCGGTGTGCGTGATACGCCAACAATGGCCGATCTAT 1370 ||||| ||| | |||||| | || || | | |||||||| |||||||| | || Sbjct 1787 GCCAA-TGCTACTTGATGAGATCGTGGGCGCAAGGGATACGCCGACAATGGC---GCAAT 1842 Query 1371 TAATTGAAAAG---TTCCCAAACCATGAGATGACAGTTATCCCTGATGCGGCAGGCCAAG 1427 | || || || | ||| |||| | || || | | || ||||| |||||||||| Sbjct 1843 TGATCAAAGAGCGCTACCCGTTCCATCAAATAACCATCTTTCCAGATGCAGCAGGCCAAG 1902 Query 1428 CTACTTCATCAAAAAAGAGTAGCGAATCTGATCATGCAATCTTGAGACAGAAGGGCTTAA 1487 | |||||||||||||| ||||| ||||| || ||||| ||| ||||| | ||||| | Sbjct 1903 CGACTTCATCAAAAAACAGTAGTGAATCAGACCATGCCATCCTGAGAGCGTCAGGCTTTA 1962 Query 1488 GGGTCGAAGTCAATTCAACAAACCCGAACATTAAAGACCGAATTAATGCAGTAAATGCTT 1547 | ||||| || |||||||| || ||||||||| | ||||| || |||||| Sbjct 1963 AACTTGAAGTAAACGGCACAAACCCAGCAATCAAAGACCGATTGAATGCGGTGAATGCTG 2022 Query 1548 TGATCTTAAATGGCAATGGTGAGCGAACACTCTTA---GTCAATACAAATAAATGCCCAA 1604 || | || || ||||| || | ||| || ||||| ||||||||||| | Sbjct 2023 CTATTTGCAACTCGAAAGGTGAACG---CTTGTTAAGGGTGAATACCAATAAATGCCCTA 2079 Query 1605 GACTCACAGAGACCTTTGAGCAGCAAGTTTATGACGATTTTGGAATGCCAGATAAGAAAT 1664 || ||||| | ||||||||||||| ||||||||||| || ||||||||||| || | Sbjct 2080 GAGCGACAGAAGCACTTGAGCAGCAAGTCTATGACGATTTCGGGATGCCAGATAAAAAGT 2139 Query 1665 CAGGCTTGGACCAT 1678 | || |||| ||| Sbjct 2140 CTGGACTGGATCAT 2153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130272520564824