Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq314 107 4e-18 seq1524 100 7e-16 seq1282 98.7 2e-15 >seq314 Length=315434 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 |||||| ||||| || |||||||||||||| || | ||| || | |||||||| | Sbjct 276239 ATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGATAAGGTGCGACCATCTTCCAATTG 276180 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| ||||| ||||| | | || || || | | || ||||| || |||||||| || Sbjct 276179 TTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGAATCTT 276120 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 || ||| | || | | || || || ||||| || ||||| ||||| ||||| Sbjct 276119 GGCCTTTACATTTTCGATAGTATCGGATGGTTCAACTTCGAGGGTAATGGTTTTACCCGT 276060 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| |||| |||||| Sbjct 276059 AAGAGTCTTCACAAAGATCTGCAT 276036 >seq1524 Length=218836 Score = 100 bits (110), Expect = 7e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||||||||| || |||||||||||||||| || || | |||||||| || Sbjct 102 TGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGACAATGTACGTCCATCTTCAAGTTGC 161 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || ||||| || | | |||||| || | | || |||||||| ||||| || || Sbjct 162 TTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGGATCTTG 221 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || | || | | | || ||| |||||||| | |||||| ||||| || || Sbjct 222 GCCTTAACGTTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGTTTTACCAGTC 281 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | ||| || || || | ||||| Sbjct 282 AAAGTTTTGACAAATATTTGCAT 304 >seq1282 Length=29674 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| ||||| || ||||||||||||||||| || | ||| || | |||||||| || Sbjct 28816 ATGCAGAGTCGATTCTTTTTGGATGTTGTAGTCAGATAATGTACGACCATCTTCAAGTTG 28875 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || || || | | ||||| || | | || |||||||| ||||| || || Sbjct 28876 TTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTGTCTTGGATCTT 28935 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 || ||| | || | | | || ||| |||||||| | |||||| ||||| || || Sbjct 28936 GGCCTTAACATTTTCAATGGTATCAGAAGGTTCTACTTCTAAAGTAATGGTTTTTCCAGT 28995 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | ||| || ||||| | ||||| Sbjct 28996 CAAAGTTTTGACGAAAATTTGCAT 29019 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| ||||||||||| |||||||||||||| || | || || | |||||||| || Sbjct 29044 ATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTACGTCCATCTTCAAGTTG 29103 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || || || ||||| | | ||||| || | | || |||||||| ||||| || || Sbjct 29104 CTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTT 29163 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 || || | || | | | || ||| || ||||| | |||||| ||||| || || Sbjct 29164 GGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATGGTTTTTCCAGT 29223 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | ||| || ||||| | ||||| Sbjct 29224 CAAAGTTTTGACGAAAATTTGCAT 29247 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| ||||||||||| |||||||||||||| || | || || | |||||||| || Sbjct 29272 ATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAATGTACGTCCATCTTCAAGTTG 29331 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || || || ||||| | | ||||| || | | || |||||||| ||||| || || Sbjct 29332 CTTGCCAGCAAAGATTAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTT 29391 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 || || | || | | | || ||| || ||||| | |||||| ||||| || || Sbjct 29392 GGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACTTCTAAAGTAATGGTTTTTCCAGT 29451 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | ||| || ||||| | ||||| Sbjct 29452 CAAAGTTTTGACGAAAATTTGCAT 29475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153795195274172