Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq1606 118 1e-21 seq922 118 1e-21 seq146 102 1e-16 >seq1606 Length=54755 Score = 118 bits (130), Expect = 1e-21 Identities = 228/334 (68%), Gaps = 2/334 (1%) Strand=Plus/Minus Query 50474 AGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAA 50533 ||| ||||| || || ||||||||||||||||||||||||||||| || || | || Sbjct 17239 AGGTGATTTGGGTCCCGTTTACGGTTTTCAATGGAGACATTTTGGCGCCGACTATAATAA 17180 Query 50534 TTGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGTT 50593 ||| | ||||| |||||| || || |||||||| || | |||| | | | Sbjct 17179 TTGTCATACTGATTACTCAGGTCATGGGGTTGATCAACTAGCCGAAGTGATAAAAAAGAT 17120 Query 50594 GAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAGA 50653 ||| ||| || ||||| |||||| | ||| | || |||||||||| | ||| Sbjct 17119 TAAAGAAAATCCAACTGATCGTCGTATTATCATGTCTGCATGGAATCCAATACAAATACC 17060 Query 50654 TCAAACCGTTTTACCTCCGTGTCA-TGTTTTATGTCAATTTTATGCCACAGACAATGTTT 50712 |||| | || || || || || ||| || | ||||| | || | || || | Sbjct 17059 ACAAATGGCATTGCCGCCTTGCCATTGTCTTGT-ACAATTCTTTGTAGCTAACGGTGAAT 17001 Query 50713 TATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTAG 50772 |||| |||||| ||| ||||| |||||||||||||| | || || || || || || | Sbjct 17000 TATCGTGTCAACTTTACCAAAGGTCAGCTGATATGGGACTTGGTGTACCATTTAATGTCG 16941 Query 50773 CTTCTTACGCTTTATTAACGTATTTGATCGCTCA 50806 | ||| || | ||||| || |||| || || Sbjct 16940 CCAGTTATGCACTCTTAACATACATGATTGCACA 16907 >seq922 Length=449141 Score = 118 bits (130), Expect = 1e-21 Identities = 224/327 (69%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 155730 CGACTCAACGCCGTCGATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAA 155789 ||| ||| |||| ||||| || || ||||| || ||||| | ||||| || ||| || Sbjct 232458 CGATTCATTGCCGATGATTGTGCAGCACGTACTAAACCTTCAATCTCAGCTCCACTGAAA 232399 Query 155790 TTTTTAGTTT-CAACGGCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAGA 155848 |||||||||| | ||| ||| | | | || || || | | | | | |||| Sbjct 232398 TTTTTAGTTTTCGACGCTAATTCTCGTATATTC-ACATCTGGATTGATTTTTTTGTATTC 232340 Query 155849 TTTCATTTTAGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCC 155908 |||||| ||| ||| | || ||||| || | ||| || | ||||||||||| | Sbjct 232339 TTTCATACGAGCTGTGTGAATGTTCAAAATCTGTACACGACCATCCTCATCGGGTAAACT 232280 Query 155909 AATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGG 155968 ||||| | | | ||||| || || |||| | | ||||| ||||| | || Sbjct 232279 GATTTCAACTTGTACCTCCAATCGACCCGGTCGCATCAGAGCTTCATCAATCATATCCTT 232220 Query 155969 TCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGA 156028 ||| ||||||||||| || | ||||| ||||| || ||| ||||| || ||||||| Sbjct 232219 TCTATTGGTCATACCAATTACCAAAATATTGTTCAATTGTTCAACACCATCGATTTTAGC 232160 Query 156029 CAATAATTGATTGACTACGGCGTCGTG 156055 || ||||||||||| |||| ||| || Sbjct 232159 TAACAATTGATTGACAACGGTGTCATG 232133 >seq146 Length=262349 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 63745 ATACCAGAAATAGGTGATAAATTTGCTTCTTTTACAGCTCAAAAAGGTACGTGTGGTATG 63804 ||||| |||| |||||||||||||| ||| | |||||| ||||| |||||||| Sbjct 198702 ATACCCCAAATTGGTGATAAATTTGCATCTCGGCACGGTCAAAAGGGTACCTGTGGTATA 198643 Query 63805 ATTTATCGACAAGAAGATATGCCTTTTACCAAAGACGGTATCGTACCCGATCTCGTCATC 63864 ||||| |||||||| ||||| |||||| || || ||| ||||||| | | ||| Sbjct 198642 CAGTATCGTCAAGAAGACATGCCGTTTACCTGCGAAGGGATCACACCCGATATTATTATC 198583 Query 63865 AATCCACACGCTTTTCCCAGTCGTATGAC 63893 ||||| |||||| |||| ||| ||||| Sbjct 198582 AATCCTCACGCTATTCCGTCTCGGATGAC 198554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667060757821920