Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coboldia_20fuscipes_20[genbank_20GCA_5F001014335.1_202015-05-28] 1,732 sequences; 98,759,061 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1282 120 7e-22 seq981 111 4e-19 >seq1282 Length=29674 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | || |||||||| || || | || || ||| || || Sbjct 29016 CAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTAGAACCTTCTGAT 28957 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| || ||||| ||||| || || || || |||||| Sbjct 28956 ACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGATCAGCAA 28897 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| || |||||||| | || | | || || ||| || Sbjct 28896 CGTTTGATTTTTGCTGGTAAACAACTTGAAGATGGTCGTACATTATCTGACTACAACATC 28837 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||||||||||| || |||||| | || || Sbjct 28836 CAAAAAGAATCGACTCTGCATTTAGTATT 28808 Score = 118 bits (130), Expect = 3e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | || |||||||| || || | || || ||| || || Sbjct 29244 CAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCTGAT 29185 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| || ||||| ||||| || || || || |||||| Sbjct 29184 ACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAGCAA 29125 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || || ||||||||| | || | | || || ||| || Sbjct 29124 CGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAACATC 29065 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| || || || || ||| | || ||| Sbjct 29064 CAAAAGGAGTCTACTCTCCATTTAGTATTG 29035 Score = 118 bits (130), Expect = 3e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | || |||||||| || || | || || ||| || || Sbjct 29472 CAAATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTTTAGAAGTTGAACCTTCTGAT 29413 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| || ||||| ||||| || || || || |||||| Sbjct 29412 ACCATTGAAAACGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAGCAA 29353 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || || ||||||||| | || | | || || ||| || Sbjct 29352 CGTTTAATCTTTGCTGGCAAGCAACTTGAAGATGGACGTACATTGTCTGACTACAACATC 29293 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| || || || || ||| | || ||| Sbjct 29292 CAAAAGGAGTCTACTCTCCATTTAGTATTG 29263 >seq981 Length=59034 Score = 111 bits (122), Expect = 4e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| | || || ||||| |||||||| ||||||||| ||||| Sbjct 46714 CAGATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTAGAGGTGGAACCATCAGAT 46773 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || || || || ||||| || || || || || || ||| Sbjct 46774 ACAATCGAAAATGTGAAAGCCAAAATCCAAGATAAAGAGGGCATTCCACCAGATCAACAA 46833 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || | |||||||| | || | |||| || || || Sbjct 46834 CGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCCGTACGTTGTCCGACTACAATATC 46893 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || ||||| || || | || ||| | ||| Sbjct 46894 CAGAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTC 46929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203704487700008