Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq139863 244 1e-59 >seq139863 Length=2592 Score = 244 bits (270), Expect = 1e-59 Identities = 474/696 (68%), Gaps = 4/696 (1%) Strand=Plus/Plus Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 ||||| || || |||||||| |||||||| ||||||| | ||| ||||| || || | Sbjct 1313 TAATCGGTCAGCAACAAATTCAATATATTGCGACATTAAATTGCAATTCATACCAATTAA 1372 Query 16852 ACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 | ||| || | || || || |||||| ||| || || || ||||| ||||| Sbjct 1373 ATTTACAGGTAATGCGTCAGTTAAAAATTCTTGTTCAATTTTCACTGCTTCAGATATAAT 1432 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971 | || || ||| | ||| | ||| | | |||||||||||| | |||||| || Sbjct 1433 TTCAATAATTCTTTCTTTACTTGGTTTTTGTATTAAATGTTTAAACATTAAACATGCAAA 1492 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 ||| ||||||||||| || ||||| || ||||| || |||||||| || || ||||| Sbjct 1493 ATCACAATGTAATCCTTCATCTCTTGAAATTAGTTCATTTGAAAATGTTAATCCTGGCAT 1552 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 || ||||| |||||||||||||| | || || ||| ||||||||| || || Sbjct 1553 AAGGCCACGTTTTTTTAACCAAAATATTGATGCAAAACTACCACTAAAGAATATTCCTTC 1612 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT 17151 || | |||||| || || | ||||| | || | || ||| | ||||| | Sbjct 1613 AACTGCTGCAAAAGCAATAATACGTTCTCCATAATTAGCTGATTTACTTGTTATCCAATC 1672 Query 17152 CTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTT 17211 |||| || ||||||| || | || | ||||| || || ||||| | Sbjct 1673 TAATGCCCAATCAGCTTTTTTTTTAACACATGGTAATGTTTCAATTGCATTAAAAAGGAA 1732 Query 17212 CTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTG 17271 ||| |||| | | | || ||||||| ||||| || | | ||||||||||||||| || Sbjct 1733 ATCTCTTTCTTTTGGATCCTTTATATATGTATCAATTAAAATGCTGTACATTTCGGAATG 1792 Query 17272 TATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 | || ||||| ||||| |||||||| ||||| || || ||||| | || ||||||||| Sbjct 1793 AACATTTTCCATAGCTATTTGAAATCCATAAAAACAACGCGCTTCAGTTACTTGAACTTC 1852 Query 17332 --CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAAC 17389 || || || ||||| | ||||||||||| || || || || || || ||||| Sbjct 1853 TTGAC-TA-AAACGTTCAACAAGATTTTCGTTAACTATACCATCTGAAGCAGCAAAAAAT 1910 Query 17390 GCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAA 17449 || || | ||| ||||||| ||| | | || | | ||||||| | | | Sbjct 1911 GCTAAAACATGTGATATGAAATGACGTTCTCCAGAAGTTAATTTGTTCCAGTCCGTCATA 1970 Query 17450 TCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAA 17485 || || |||| ||| ||||| || ||||||||| Sbjct 1971 TCCTTTGATAAATCAACTTCCTCAACCGTCCAAAAA 2006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516178522705560