Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq148620 109 6e-19 seq13835 109 6e-19 seq91257 107 2e-18 seq18325 107 2e-18 seq158080 105 8e-18 seq180733 104 3e-17 seq189851 93.3 5e-14 >seq148620 Length=1050 Score = 109 bits (120), Expect = 6e-19 Identities = 91/109 (83%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 801 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 860 Query 60117 TCACCACTATACTACCGAGGATTGAATATATAAC-TTGAATATTACAAT 60164 | ||||||||||||||||||| | ||| || || || ||| || |||| Sbjct 861 TGACCACTATACTACCGAGGACTTGATAAATTACATTCAAT-TTTCAAT 908 >seq13835 Length=9045 Score = 109 bits (120), Expect = 6e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 |||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| || Sbjct 6958 ATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAAC 7017 Query 60121 CACTATACTACCGAGGATTG 60140 ||||||||||||||||| || Sbjct 7018 CACTATACTACCGAGGAATG 7037 >seq91257 Length=3616 Score = 107 bits (118), Expect = 2e-18 Identities = 82/96 (85%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 60042 AAATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGT 60101 ||||||| || | |||||| |||| |||| ||||||||||||| |||||||||||| Sbjct 1677 AAATTAAAATTAAAAAAAAATC--CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGT 1734 Query 60102 GACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||||||| ||||| ||||||||||||||||||| Sbjct 1735 GACAGGCGGGGATACTGACCACTATACTACCGAGGA 1770 >seq18325 Length=2424 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 173 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 114 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 113 TATACTACCGAGGA 100 >seq158080 Length=2575 Score = 105 bits (116), Expect = 8e-18 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 60053 TATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||| |||||| |||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 2191 TATAAAAAATC--CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 2134 Query 60113 ATACTCACCACTATACTACCGAGGA 60137 ||||| ||||||||||||||||||| Sbjct 2133 ATACTAACCACTATACTACCGAGGA 2109 >seq180733 Length=2293 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1459 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1400 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 1399 TACTACCGAGGA 1388 >seq189851 Length=2145 Score = 93.3 bits (102), Expect = 5e-14 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 60079 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 60138 |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 1533 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGAC 1474 Query 60139 TGAA 60142 |||| Sbjct 1473 TGAA 1470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307165252760