Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq139863 381 5e-101 >seq139863 Length=2592 Score = 381 bits (422), Expect = 5e-101 Identities = 536/740 (72%), Gaps = 18/740 (2%) Strand=Plus/Plus Query 16039 TTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCAT 16098 |||||| ||||||||| |||||||| || || |||||||| ||||| || ||| Sbjct 1289 TTTATCAACTCCCAATTCTCTCAATAATCGGTCAGCAACAAATTCAATATATTGCGACAT 1348 Query 16099 TAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttC 16158 ||||| || ||||| || ||||| || ||||| | ||| || |||||||| | || ||| Sbjct 1349 TAAATTGCAATTCATACCAATTAAATTTACAGGTAATGCGTCAGTTAAAAATTCTTGTTC 1408 Query 16159 TATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT-TAATA 16217 || || || |||||| || || || | | | | | |||| | || || || Sbjct 1409 AATTTTCACTGCTTCAGATATAATTTCAATAATT-CTTTCTTTACTTGGTTTTTGTATTA 1467 Query 16218 AGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACT 16277 | ||||||||||||| ||| |||||||||||||| |||||||| || || |||| | Sbjct 1468 AATGTTTAAACATTAAACATGCAAAATCACAATGTAATCCTTCATCTCTTGAAATTAGTT 1527 Query 16278 CGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAA 16337 | ||||||||||| | |||||||| || || |||||||| | ||||||||| | |||| Sbjct 1528 CATTTGAAAATGTTAATCCTGGCATAAGGCCACGTTTTTTTAACCAAAATATTGATGCAA 1587 Query 16338 ATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG 16397 | |||| ||||||||| ||||||||||| ||||| |||| | || || || || Sbjct 1588 AACTACCACTAAAGAATATTCCTTCAACTGCTGCAAAAGCAATAATACGTTCTCCATAAT 1647 Query 16398 TTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACA-GTTC 16456 | ||||||| |||||| | | ||||||| ||||||| ||||||||| | | Sbjct 1648 TAGCTGATTTACTTGTTATCCAATCTAATGCCCAATCAGCTTTTTTTTTAACACATGGTA 1707 Query 16457 ATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCT 16516 ||||| || ||||||||||| | ||| | ||||||| ||| ||||| ||||| Sbjct 1708 ATGTT-TCAATTGCATTAAAAAGGAAATCTCTTTCTTTTGGATCCTTTATATATGTATCA 1766 Query 16517 ATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAG 16576 |||| | || |||||||| ||||||| ||| ||||| ||||| ||||| |||||||| Sbjct 1767 ATTAAAATGCTGTACATTTCGGAATGAACATTTTCCATAGCTATTTGAAATCCATAAAAA 1826 Query 16577 CATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAAC 16635 || | ||||| | || ||| ||||| || ||||| | ||| | | ||||||||||| Sbjct 1827 CAACGCGCTTCAGTTACTTGAACTTCTTGACTAAAA-CGTTCAACAAGATTTTCGTTAAC 1885 Query 16636 TATTCCATCGCTAGCTGCAAAAAACGC--AAGTATGTGTTTAATAAAAtttttttCGTTA 16693 ||| ||||| ||| |||||||| || || ||||| | || ||| | |||| Sbjct 1886 TATACCATCTGAAGCAGCAAAAAATGCTAAAACATGTGAT--ATGAAA----TGACGTTC 1939 Query 16694 T-CTGAA---AGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGT 16749 | | ||| | ||| |||||| | | ||| ||||||||||| || || || || || Sbjct 1940 TCCAGAAGTTAATTTGTTCCAGTCCGTCATATCCTTTGATAAATCAACTTCCTCAACCGT 1999 Query 16750 CCAAAAAGAAGCAACAGCCT 16769 ||||||||| || |||||| Sbjct 2000 CCAAAAAGATGCTTCAGCCT 2019 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 |||||| || || |||| || ||||||||| | |||| | ||| | ||| Sbjct 1070 TTAAAAGTCTGCGTCAAGAGTGAATACATTATCTAATGGGTTTGCTGTTACTCCCCATTT 1129 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||||||||| |||| | |||||||| || |||||||| || || ||||| || ||| Sbjct 1130 TTGATATTCACCAACTTTTTTTTCAAAAAAGTTTGTTTTACCGTCCAATGATATTAATTC 1189 Query 16006 CATAAAATCAAAAGGATTT 16024 ||||||| |||||||||| Sbjct 1190 CATAAAACTAAAAGGATTT 1208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461290291896200