Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq139863 399 2e-106 >seq139863 Length=2592 Score = 399 bits (442), Expect = 2e-106 Identities = 525/723 (73%), Gaps = 6/723 (1%) Strand=Plus/Plus Query 14006 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGAC 14065 ||||||||| || | |||| | ||||| || |||| || ||||||||||| ||| Sbjct 1287 ACTTTATCAACTCCCAATTCTCTCAATAATCGGTCAGCAACAAATTCAATATATTGCGAC 1346 Query 14066 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 14125 ||||||| ||||||||||| |||| |||||||| | | | ||||||||||||| | Sbjct 1347 ATTAAATTGCAATTCATACCAATTAAATTTACAGGTAATGCGTCAGTTAAAAATTCTTGT 1406 Query 14126 TCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTT 14185 || || ||| || || |||||| |||| |||| ||| || | | || Sbjct 1407 TCAATTTTCACTGCTTCAGATATAATTTCAATAATTCTTTCTTTACTTGGTTTTTGTATT 1466 Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245 | ||||||||| |||||||| |||||||||||||| | || |||||||| ||| ||| Sbjct 1467 AAATGTTTAAACATTAAACATGCAAAATCACAATGTAATCCTTCATCTCTTGAAATTAGT 1526 Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305 || ||||||||||||||||||||||| | || |||||||||||||||||||||| || Sbjct 1527 TCATTTGAAAATGTTAATCCTGGCATAAGGCCACGTTTTTTTAACCAAAATATTGATGCA 1586 Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14365 || || |||||||||||| |||||||| ||||| || || | ||||||||| | Sbjct 1587 AAACTACCACTAAAGAATATTCCTTCAACTGCTGCAAAAGCAATAATACGTTCTCCATAA 1646 Query 14366 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14425 ||| ||| | | |||||| | | ||||| |||| ||||||||||| | | Sbjct 1647 TTAGCTGATTTACTTGTTATCCAATCTAATGCCCAATCAGCTTTTTTTTTAACACATGGT 1706 Query 14426 ATTGTTTCAATAGCATTAAATA--AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTAT 14483 | ||||||||| |||||||| | || || |||| || | ||| || ||||||| Sbjct 1707 AATGTTTCAATTGCATTAAAAAGGAAATCTCTTTCTTTTGGATCCTT--TATATATGTAT 1764 Query 14484 CAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAA 14543 |||| | | ||| |||||||| || || | |||||||||||||| ||||| ||||||| Sbjct 1765 CAATTAAAATGCTGTACATTTCGGAATGAACATTTTCCATAGCTATTTGAAATCCATAAA 1824 Query 14544 AACATCTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTA 14602 |||| | ||||| | ||| || || ||| ||||| | ||| | | |||||| ||| Sbjct 1825 AACAACGCGCTTCAGTTACTTGAACTTCTTGACTAAAA-CGTTCAACAAGATTTTCGTTA 1883 Query 14603 ACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA 14662 ||||||||||| ||| ||||||||||| || | | | || || | | ||| || Sbjct 1884 ACTATACCATCTGAAGCAGCAAAAAATGCTAAAACATGTGATATGAAATGACGTTCTCCA 1943 Query 14663 TTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAA 14722 | | ||| ||||| || | | |||||| || | ||| ||||| ||||| |||||| Sbjct 1944 GAAGTTAATTTGTTCCAGTCCGTCATATCCTTTGATAAATCAACTTCCTCAACCGTCCAA 2003 Query 14723 AAA 14725 ||| Sbjct 2004 AAA 2006 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/91 (85%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 13907 CCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGAT 13966 |||||||| |||||||||| |||| |||||||||| ||||| |||||||| |||| |||| Sbjct 1123 CCCATTTT-TGATATTCACCAACTTTTTTTTCAAAAAAGTTTGTTTTACCGTCCAATGAT 1181 Query 13967 ATATTTTCCATAAAATCAAATGGATTTGTTG 13997 || |||||||||| ||| ||||||| || Sbjct 1182 ATTAATTCCATAAAACTAAAAGGATTTGGTG 1212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481071502185560