Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq139863 403 2e-107 >seq139863 Length=2592 Score = 403 bits (446), Expect = 2e-107 Identities = 526/723 (73%), Gaps = 6/723 (1%) Strand=Plus/Plus Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733 ||||||||| || | |||| | ||||| ||||||| ||| ||||||||||| ||| Sbjct 1287 ACTTTATCAACTCCCAATTCTCTCAATAATCGGTCAGCAACAAATTCAATATATTGCGAC 1346 Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793 ||||||| ||||||||||| |||| |||||||| | | | ||||||||||||| | Sbjct 1347 ATTAAATTGCAATTCATACCAATTAAATTTACAGGTAATGCGTCAGTTAAAAATTCTTGT 1406 Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTT 13853 || || ||| || || |||||| |||| | || ||| || | | || Sbjct 1407 TCAATTTTCACTGCTTCAGATATAATTTCAATAATTCTTTCTTTACTTGGTTTTTGTATT 1466 Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 | ||||||||| |||||||| |||||||||||||| | || |||||||| ||| ||| Sbjct 1467 AAATGTTTAAACATTAAACATGCAAAATCACAATGTAATCCTTCATCTCTTGAAATTAGT 1526 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 || ||||||||||||||||||||||| | || |||||||||||||||||||||| ||| Sbjct 1527 TCATTTGAAAATGTTAATCCTGGCATAAGGCCACGTTTTTTTAACCAAAATATTGATGCA 1586 Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14033 || || |||||||||||| |||||||| ||||| || || | ||||||||| | Sbjct 1587 AAACTACCACTAAAGAATATTCCTTCAACTGCTGCAAAAGCAATAATACGTTCTCCATAA 1646 Query 14034 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14093 ||| ||| | | |||||| | | ||||| |||| ||||||||||| | | Sbjct 1647 TTAGCTGATTTACTTGTTATCCAATCTAATGCCCAATCAGCTTTTTTTTTAACACATGGT 1706 Query 14094 ATTGTTTCAATAGCATTAAATA--AATATTCCTTCTCTTTAGTACTTGAAATGTATGTAT 14151 | ||||||||| |||||||| | || || |||| || | ||| || ||||||| Sbjct 1707 AATGTTTCAATTGCATTAAAAAGGAAATCTCTTTCTTTTGGATCCTT--TATATATGTAT 1764 Query 14152 CAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAA 14211 |||| | | ||| |||||||| || || | |||||||||||||| ||||| ||||||| Sbjct 1765 CAATTAAAATGCTGTACATTTCGGAATGAACATTTTCCATAGCTATTTGAAATCCATAAA 1824 Query 14212 AGCATCTAGCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTA 14270 | || | ||||| | ||| ||||| || ||||| | ||| | | |||||| ||| Sbjct 1825 AACAACGCGCTTCAGTTACTTGAACTTCTTGACTAAAA-CGTTCAACAAGATTTTCGTTA 1883 Query 14271 ACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA 14330 ||||||||||| ||| ||||||||||| || | | | || || | | ||| || Sbjct 1884 ACTATACCATCTGAAGCAGCAAAAAATGCTAAAACATGTGATATGAAATGACGTTCTCCA 1943 Query 14331 TTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAA 14390 | | ||| ||||| || | | |||||| || | ||| ||||| ||||| |||||| Sbjct 1944 GAAGTTAATTTGTTCCAGTCCGTCATATCCTTTGATAAATCAACTTCCTCAACCGTCCAA 2003 Query 14391 AAA 14393 ||| Sbjct 2004 AAA 2006 Score = 95.1 bits (104), Expect = 1e-14 Identities = 74/87 (85%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 13575 CCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGAT 13634 |||||||| |||||||||| |||| |||||||||| ||||| |||||||| |||| |||| Sbjct 1123 CCCATTTT-TGATATTCACCAACTTTTTTTTCAAAAAAGTTTGTTTTACCGTCCAATGAT 1181 Query 13635 ATATTTTCCATAAAATCAAATGGATTT 13661 || |||||||||| ||| |||||| Sbjct 1182 ATTAATTCCATAAAACTAAAAGGATTT 1208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478460816477800