Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq139863 394 9e-105 >seq139863 Length=2592 Score = 394 bits (436), Expect = 9e-105 Identities = 524/723 (72%), Gaps = 6/723 (1%) Strand=Plus/Plus Query 13462 ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGAC 13521 ||||||||| || | |||| ||||||| ||||||| ||| ||||||||||| ||| Sbjct 1287 ACTTTATCAACTCCCAATTCTCTCAATAATCGGTCAGCAACAAATTCAATATATTGCGAC 1346 Query 13522 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTT 13581 ||||||| ||||||||||| |||| |||||||| | | | |||||||||||||| | Sbjct 1347 ATTAAATTGCAATTCATACCAATTAAATTTACAGGTAATGCGTCAGTTAAAAATTCTTGT 1406 Query 13582 TCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT 13641 || || ||| || || |||||| |||| | || ||| || | | || Sbjct 1407 TCAATTTTCACTGCTTCAGATATAATTTCAATAATTCTTTCTTTACTTGGTTTTTGTATT 1466 Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 | ||||||||| |||||||| |||||||||||||| | || |||||||| ||| ||| Sbjct 1467 AAATGTTTAAACATTAAACATGCAAAATCACAATGTAATCCTTCATCTCTTGAAATTAGT 1526 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || ||||||||||||||||||||||| | || |||||||||||||||||||||| || Sbjct 1527 TCATTTGAAAATGTTAATCCTGGCATAAGGCCACGTTTTTTTAACCAAAATATTGATGCA 1586 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 || || |||||||||||| |||||||| ||||| || || | ||||||||| | Sbjct 1587 AAACTACCACTAAAGAATATTCCTTCAACTGCTGCAAAAGCAATAATACGTTCTCCATAA 1646 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 13881 ||| ||| ||| |||||| | | ||||| |||| ||||||||||| | | Sbjct 1647 TTAGCTGATTTACTTGTTATCCAATCTAATGCCCAATCAGCTTTTTTTTTAACACATGGT 1706 Query 13882 ATTGTTTCGATTGCATTGAATA--AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTAT 13939 | |||||| |||||||| || | || || |||| || | ||| || ||||||| Sbjct 1707 AATGTTTCAATTGCATTAAAAAGGAAATCTCTTTCTTTTGGATCCTT--TATATATGTAT 1764 Query 13940 CAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAA 13999 |||| | | ||| |||||||| || || | ||||| |||||||| ||||| ||||||| Sbjct 1765 CAATTAAAATGCTGTACATTTCGGAATGAACATTTTCCATAGCTATTTGAAATCCATAAA 1824 Query 14000 AACATCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTA 14058 |||| | ||||| | ||| || || || ||||| | ||| | | ||||| ||| Sbjct 1825 AACAACGCGCTTCAGTTACTTGAACTTCTTGACTAAAA-CGTTCAACAAGATTTTCGTTA 1883 Query 14059 ACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA 14118 || |||||||| ||| ||||||||||| || | | | || || | | ||| || Sbjct 1884 ACTATACCATCTGAAGCAGCAAAAAATGCTAAAACATGTGATATGAAATGACGTTCTCCA 1943 Query 14119 TTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAA 14178 | | ||| ||||| || | | |||||| || | ||| ||||| ||||| |||||| Sbjct 1944 GAAGTTAATTTGTTCCAGTCCGTCATATCCTTTGATAAATCAACTTCCTCAACCGTCCAA 2003 Query 14179 AAA 14181 ||| Sbjct 2004 AAA 2006 Score = 98.7 bits (108), Expect = 9e-16 Identities = 77/91 (85%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 13363 CCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGAT 13422 |||||||| |||||||||| |||| |||||||||||||||| |||||||| |||| |||| Sbjct 1123 CCCATTTT-TGATATTCACCAACTTTTTTTTCAAAAAAGTTTGTTTTACCGTCCAATGAT 1181 Query 13423 ATATTTTCCATAAAATCGAATGGATTTGTTG 13453 || |||||||||| || ||||||| || Sbjct 1182 ATTAATTCCATAAAACTAAAAGGATTTGGTG 1212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477324625631880