Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq105373 120 3e-22 seq23123 105 7e-18 >seq105373 Length=2707 Score = 120 bits (132), Expect = 3e-22 Identities = 494/776 (64%), Gaps = 31/776 (4%) Strand=Plus/Plus Query 156458 AGATTTAATTTGATTAGATCATCGACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGAC 156517 ||||| | || |||| ||| | | |||| | || || ||||||||||| || || Sbjct 33 AGATTAAGATTAATTAAATCTTTAATTAAGTGATGATTAACTACTTGAAATTCACCAGAA 92 Query 156518 AAAACACGTCTCAAAAACAAATTACTGTGAA----ACGGTTCAAATGACTCGTTGTTGTT 156573 | ||| ||||| | | ||| |||| |||| ||||| || ||||| || Sbjct 93 AGAACTCGTCTATTGTATATATT----TGAAGTATACGGCTCAAAAGATTCGTTATTACC 148 Query 156574 GAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAATGAATTACGTAATCC 156633 | |||||||| || | || || ||||| || | | | |||||| || | || Sbjct 149 TAAAATTTGTGCAGTAGATGCGGTTGGCATAGGGGCAATCAATAGTGAATTCCGGACGCC 208 Query 156634 GTATTTTTGTATATTTATTTTCAACTGTGACCAGTCCCATAACGAAGTCGGTACCGTATT 156693 | ||| || ||| ||| || | ||||| ||||| || || ||| |||| Sbjct 209 ATGTTTAGCGATTTTTTCTTTTAAGTCAGACCAATCCCACAAGTCCGTGGGTGTTTTATT 268 Query 156694 CCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTACCGGCAAACGTGCTATAAGG 156753 ||||| ||| || ||||| || |||| || ||| ||| ||| | |||| | Sbjct 269 CCACATATCATACTGCAAAATACCTTTACT--------TACAGGCGAACC-GTTATAGGT 319 Query 156754 CTCACT---AACAGAT------GCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACAC 156804 ||| | || || || | || ||||||| || | ||| | | || | Sbjct 320 TTCATATGAACCATATTTTTCCGCTAACTCACAACTGGCTTCCAAAGCACCGTAGTAAAT 379 Query 156805 AGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACGTACGGTATGCGCAA 156864 |||||| ||| |||| |||||||| || | | || | || || ||||| Sbjct 380 TGTTTCAAAAATCTGTTGATTCAATAATCTAGCTTCTTTACTTTCATAAGGATAACGCAA 439 Query 156865 CATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATT 156924 | | ||| || || ||||| ||||||| ||||| || || || ||||| | | ||| Sbjct 440 TAGGATAAAAGCGTCCGCCAATCCTTGAACTCCAATTCCAATTGGTCGATGCCTAAAATT 499 Query 156925 AGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATC 156984 ||||||||| || | || ||||| | || ||| ||||||||||||||| | Sbjct 500 AGATTTTTTAGCCTCTGGAAGTGGGTAATAGTTTACATCTATAATTTTATTCAAATTTCT 559 Query 156985 CACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTATCATTATTG----A 157040 || | |||| ||| | | |||| ||||||||| | |||| | | | Sbjct 560 TGTTATAATTTTGGAAACATTTTTCAATTCAATAAAATCAAACTTTCCATT-TGGTAACA 618 Query 157041 TATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAAT 157100 | | |||| | ||||| || || | ||| || |||||| |||| || | ||| Sbjct 619 CAAACATATTTAGAGCAATAGATGCCAAATTGCAAACGGCAATTTCATCTGAACAAGAAT 678 Query 157101 ATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGC 157160 ||| || ||||| | ||||||||||||||| || ||| ||| ||||||| | Sbjct 679 ATTCCACAATTTCTGTACACAAATTGCTGCAACGAATTGTTCCAAGATTTTTTTGATTAC 738 Query 157161 TTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGA 157216 |||| |||||||||| ||| ||||| | || || || | || ||||| ||||| Sbjct 739 TTTTACGGTTGCAAGTGTCTTTGTACATTATATATGGATTACCAGTTTCAACTTGA 794 >seq23123 Length=8273 Score = 105 bits (116), Expect = 7e-18 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 60400 TTGCCCAAATCACCGACGTGTCTCACCGCAGC-GTTGGGCGCACCATGATTGCTACCCGT 60458 ||||| |||||||| |||||||| | |||| |||||| ||||||||| | |||| Sbjct 4519 TTGCCTAAATCACCAACGTGTCTTTCTTCAGCTGTTGGG-GCACCATGAGTTTTACCATG 4577 Query 60459 CGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCAAATTCGTGTAC 60518 |||||||||||| |||| ||||| ||||| || || | |||| |||||||| ||||| Sbjct 4578 TGGATTAAAATGTGCTCCAGCCGAGGTACAACCATTTGTATTGTCACCAAATTCATGTAC 4637 Query 60519 GTGAAAACCGTG 60530 |||||||| || Sbjct 4638 ATGAAAACCATG 4649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505675140475440