Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq139863 376 2e-99 >seq139863 Length=2592 Score = 376 bits (416), Expect = 2e-99 Identities = 531/731 (73%), Gaps = 20/731 (3%) Strand=Plus/Plus Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024 || |||||| || |||| |||||||||||| || || || || |||||||| || Sbjct 1299 CCCAATTCTCTCAATAATCGGTCAGCAACAAATTCAATATATTGCGACATTAAATTGCAA 1358 Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084 ||||| || ||||| |||||||| | || || |||||||| | || ||| || | ||| Sbjct 1359 TTCATACCAATTAAATTTACAGGTAATGCGTCAGTTAAAAATTCTTGTTCAATTTTCACT 1418 Query 13085 GCTTC-GATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGA--TAGATGCTTA 13141 ||||| |||| || || | ||| | |||| || | | | |||| || ||| ||| Sbjct 1419 GCTTCAGATATA-ATTTCAATAATT-CTTTCTTTACTTG-GTTTTTGTATTAAATGTTTA 1475 Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 ||||| | ||||||||||||||| || |||||||||||||| ||||| || |||||| Sbjct 1476 AACATTAAACATGCAAAATCACAATGTAATCCTTCATCTCTTGAAATTAGTTCATTTGAA 1535 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 ||||||| || |||||||| || |||||||| | ||||||||| | ||||| ||| Sbjct 1536 AATGTTAATCCTGGCATAAGGCCACGTTTTTTTAACCAAAATATTGATGCAAAACTACCA 1595 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 ||| ||||||||||||||||||||||| || || | | ||| ||||| || | Sbjct 1596 CTAAAGAATATTCCTTCAACTGCTGCAAAAGCAATAATACGTTCTCCATAATTAGCTGAT 1655 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCA-GTTCATATTTTC 13380 ||||| |||||| | | ||||| | ||||||| |||||| || | | || |||| Sbjct 1656 TTACTTGTTATCCAATCTAATGCCCAATCAGCTTTTTTTTTAACACATGGTAAT-GTTTC 1714 Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440 ||||| ||||| | ||| | |||| || || ||||| ||||| || || | Sbjct 1715 AATTGCATTAAAAAGGAAATCTCTTTCTTTTGGATCCTTTATATATGTATCAATTAAAAT 1774 Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 ||| |||||||| ||||||| ||||||||| |||||||| || ||||||||||| | || Sbjct 1775 GCTGTACATTTCGGAATGAACATTTTCCATAGCTATTTGAAATCCATAAAAACAACGCGC 1834 Query 13501 CTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGT 13559 || | ||| |||||||| || ||||| | ||| | | |||||||||||||| || | Sbjct 1835 TTCAGTTACTTGAACTTCTTGACTAAAA-CGTTCAACAAGATTTTCGTTAACTATACCAT 1893 Query 13560 CACTAGCAGCaaaaaaaGC--AAGTATGTGCTTAATAAAttttttttCGTTTTCTGA--- 13614 | |||||||||||| || || ||||| | || || | ||| | | || Sbjct 1894 CTGAAGCAGCAAAAAATGCTAAAACATGTGAT--ATGAAATGACGTTC---TCCAGAAGT 1948 Query 13615 CAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGA 13674 || || ||| || | | ||| ||||||||||| || |||||||| ||||||||||| Sbjct 1949 TAATTTGTTCCAGTCCGTCATATCCTTTGATAAATCAACTTCCTCAACCGTCCAAAAAGA 2008 Query 13675 AGCAACAGCCT 13685 || |||||| Sbjct 2009 TGCTTCAGCCT 2019 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||||||||| | |||| |||||||||||||||||||||| || || || || || Sbjct 1127 TTTTTGATATTCACCAACTTTTTTTTCAAAAAAGTTTGTTTTACCGTCCAATGATATTAA 1186 Query 12919 TTCCATAAAATCGAAAGGATTT 12940 |||||||||| ||||||||| Sbjct 1187 TTCCATAAAACTAAAAGGATTT 1208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429872436748434