Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq139863 273 5e-68 >seq139863 Length=2592 Score = 273 bits (302), Expect = 5e-68 Identities = 494/715 (69%), Gaps = 18/715 (3%) Strand=Plus/Minus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811 |||| | || ||||||||||| || || ||||| ||| | || | || | | || | Sbjct 2019 AGGCTGAAGCATCTTTTTGGACGGTTGAGGAAGTTGATTTATCAAAGGATATGACGGACT 1960 Query 268812 GGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAG 268871 |||| || |||| | | |||| | || ||||| || || | || |||||||| | Sbjct 1959 GGAACAAATTAACTTCTGGAGAACGTCATTTCATATCACATGTTTTAGCATTTTTTGCTG 1900 Query 268872 TTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT-GTCAAGAGGTACAGATT 268930 | |||||||| |||||||||||||| || || | ||| | ||||||| || || | Sbjct 1899 CTTCAGATGGTATAGTTAACGAAAATCTTGTTGA-ACGTTTTAGTCAAGAAGTTCAAGTA 1841 Query 268931 CCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATG 268990 ||||||| | |||||||| ||||| || |||||||| |||||| ||||||| || ||| Sbjct 1840 ACTGAAGCGCGTTGTTTTTATGGATTTCAAATAGCTATGGAAAATGTTCATTCCGAAATG 1781 Query 268991 TACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAA-AGA----CTAT 269045 ||||| | ||||| ||||| |||||| | ||| | |||||||| ||| || | Sbjct 1780 TACAGCATTTTAATTGATACATATATAAAGGAT-----CCAAAAGAAAGAGATTTCCTTT 1726 Query 269046 TTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGA 269105 || | | || ||| | ||||| | ||||||| |||| ||||| | | |||| Sbjct 1725 TTAATGCAATTGAAACATTACCATGTGTTAAAAAAAAAGCTGATTGGGCATTAGATTGGA 1666 Query 269106 TA--AACGATAGC-GCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTA 269162 || || | | | || ||| |||||| | | |||||||||| || || ||||| | Sbjct 1665 TAACAAGTAAATCAGCTAATTATGGAGAACGTATTATTGCTTTTGCAGCAGTTGAAGGAA 1606 Query 269163 TATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAG 269222 |||||||| || |||||| | || |||||||| || ||| | ||||||||||||| Sbjct 1605 TATTCTTTAGTGGTAGTTTTGCATCAATATTTTGGTTAAAAAAACGTGGCCTTATGCCAG 1546 Query 269223 GATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTT 269282 ||||||| || || || ||| | || || || ||||| ||||| || || || || | Sbjct 1545 GATTAACATTTTCAAATGAACTAATTTCAAGAGATGAAGGATTACATTGTGATTTTGCAT 1486 Query 269283 GTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTA 269342 ||||| | || ||| || | ||| ||||| | |||| ||| | ||||||| Sbjct 1485 GTTTAATGTT---TAAACATTTAATACAAAAACCAAGTAAAGAAAGAATTATTGAAATTA 1429 Query 269343 TAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTA 269402 || | ||| || | ||| ||||||| |||| || || || || | || | | Sbjct 1428 TATCTGAAGCAGTGAAAATTGAACAAGAATTTTTAACTGACGCATTACCTGTAAATTTAA 1369 Query 269403 TCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATT 269457 | ||||||||| |||| | ||| |||||||| | || || |||| |||| Sbjct 1368 TTGGTATGAATTGCAATTTAATGTCGCAATATATTGAATTTGTTGCTGACCGATT 1314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148280989911436