Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq205827 141 2e-29 seq158350 105 1e-18 seq109337 98.7 2e-16 seq137779 89.7 1e-13 seq161787 82.4 1e-11 >seq205827 Length=1823 Score = 141 bits (156), Expect = 2e-29 Identities = 185/256 (72%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 7272 CATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAA 7331 |||||||||||| |||||||||| ||| ||||| | | ||| | |||||||| ||| Sbjct 963 CATGTCCGTATTAACATGATCATTATAGATATGTCTTAAATTTAAATCATCTTGTTTGAA 904 Query 7332 CAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTG 7391 | | | ||| |||| ||||||||| || | ||||| ||||| || ||||||| ||| Sbjct 903 TACAAGTATAAAATTTGTATTATCTCTTATTAAATGCTTAGGTATCCGAGTATAAGATTG 844 Query 7392 ACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTG 7451 ||| | ||| || || || ||||| | | || |||||||| ||| || | ||| Sbjct 843 ACATAAATAAAAACTATCTACATCTTGATAACGTCCCATGCAAAAATAATTCCTTATGGT 784 Query 7452 ATCCTGTTTTTCACAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTC 7511 ||| || || || ||||||||||| |||||||| | | || ||||| | || || | Sbjct 783 ATCTTGCTTGTCGCAAGCAACATCATCAAATATAAATATTGAATTAGGTTGAGATTCAGC 724 Query 7512 AGGCTTGATTACAGCT 7527 ||| | |||||| || Sbjct 723 AGGATCAATTACATCT 708 >seq158350 Length=1950 Score = 105 bits (116), Expect = 1e-18 Identities = 275/415 (66%), Gaps = 7/415 (2%) Strand=Plus/Minus Query 5310 AACTCTCGCCACATTTTCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCTTTG 5369 ||||| ||||||||| || || | |||||||| ||||||||| || || ||||| Sbjct 1443 AACTCCTTCCACATTTTTGTTTTTAAGGTTCTATTTAAACGTTCAACAATTGAGGCTTTT 1384 Query 5370 AGATTGCTGAATGTTGAATACAGATTTATCT--TGTGCTGCTTCATCAGATCTTTGAATT 5427 | || ||||||||||| |||| || | | | | || ||| | || | || Sbjct 1383 AACGAACTAAATGTTGAATAATGATTGATATGATATTCGGC--CATTAAATTTGCAAAAG 1326 Query 5428 CTTTGTTGTAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGG-GATACGACCTTGC 5486 ||| || ||||||||||||| | ||| || ||||| || || ||| | | Sbjct 1325 TTTTATTAAAAAACTCTTTACCATCATCGGTTTGCAGATTTTTTGGTGATCTTTTACTCC 1266 Query 5487 TGAAGTACAGACTT--CATAGCACTTGTGACATCTACACCACTTTTAGACTTAATTGGAA 5544 | | | | |||| ||| || || |||| | || | ||||| |||| ||||| Sbjct 1265 TTATAAATATACTTTGCATTGCTACCGTTACATTTTCAGCGGTTTTATTTTTAAGTGGAA 1206 Query 5545 CTGCCCAGGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTTTAT 5604 ||||| |||||||||||||| | || || | || | ||| | |||| |||| Sbjct 1205 TAGCCCAAGCATATTTTGAAAAAGTGTCAATCACAGTCAATAGAAATCGAAATCCATTAT 1146 Query 5605 TGACTGTTGCATATGGAATCATCTCAACCAAGTCAGCTTGCCAAGTCTCATCGAGACCTC 5664 | | | |||| | | ||| || || || |||||||||||| ||||| | ||| Sbjct 1145 TTTGTTTAACATAAGCACCCATTTCTACTAAATCAGCTTGCCAAAGATCATCAAACCCTT 1086 Query 5665 GGATATCAACATGACGACGTTTATAGTTTCTACGAGCTGGTTTGTGAAGCTCTTC 5719 || ||| | || | |||| | |||||||| |||| ||||||||||||||| Sbjct 1085 TAATTATAACTCGTCGTCTTTTAAAATTTCTACGTGCTGCTTTGTGAAGCTCTTC 1031 >seq109337 Length=3741 Score = 98.7 bits (108), Expect = 2e-16 Identities = 237/352 (67%), Gaps = 9/352 (3%) Strand=Plus/Plus Query 5308 TAAACTCTCGCCACATTTTCGTCTTAAGTGTTCTATTGAAACGTTC-ACATATGGATGCT 5366 |||||| | ||||||| | || | || | ||| || ||||| ||| ||||||||| Sbjct 1341 TAAACTGTTTCCACATTGAGTTTTTTAAAGTGCGATTAAAGCGTTCCACA-ATGGATGCT 1399 Query 5367 TTGAGATTGCTGAA--TGTTGAATACAGATTTATCTTGTGCTGCTTCATCAGATCTTTGA 5424 || | ||| | ||| ||| ||| |||| ||| | | ||| || | ||||| Sbjct 1400 TTTA-ATT-CAGAAAATGTATGATAATGATTAATCCCTTTTATATCCATAAGCTTTTTGA 1457 Query 5425 ATTCTTTGTTGTAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGGGATACG---AC 5481 |||||||||| |||| |||||||| |||||| || | ||| ||||| | | | | Sbjct 1458 ATTCTTTGTTAAAAAATTCTTTACCTTGATCAGATTGAATATTTTTAGGTAGATGCTTAG 1517 Query 5482 CTTGCTGAAGTACAGACTTCATAGCACTTGTGACATCTACACCACTTTTAGACTTAATTG 5541 | | | || | || ||| || | |||| | | ||| ||||||| Sbjct 1518 CACGTTTAAAAATGTTCTCCATTCCAAGTAAAACATTATTGGCGTTCTTACTTTTAATTG 1577 Query 5542 GAACTGCCCAGGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTT 5601 | | || | ||| ||||||||||| ||||||||| || | | ||| ||||| |||| Sbjct 1578 GTTCAGCATAAGCAAATTTTGAAAATGTATCTATGACGGTTAATAAATATTTGTAACCTT 1637 Query 5602 TATTGACTGTTGCATATGGAATCATCTCAACCAAGTCAGCTTGCCAAGTCTC 5653 |||| | |||||||||||||||| || || || ||| ||||||||| || Sbjct 1638 TATTTTCCTTTGCATATGGAATCATTTCCACTAAATCAATTTGCCAAGTATC 1689 >seq137779 Length=1658 Score = 89.7 bits (98), Expect = 1e-13 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 7337 CGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGA 7396 |||||| | |||||||||||| || | || || || |||| |||| | ||||| | Sbjct 538 CGAGAA--TATGCATTATCTCTTATTAAATGTTTAGGGATTCTGATATAGGACTGACATA 595 Query 7397 GATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCT 7456 ||| |||||||| ||||| | ||||| | |||||| || || | | || | ||||| Sbjct 596 AATAAAAGCTGTCCACATCTTGATGTCGCCTCATGCACAAGTAATTTCTTATATTATCCT 655 Query 7457 GTTTTTCACAAGCAACATCGTCAAATATCAT 7487 | || || || |||||||| |||||||| || Sbjct 656 GCTTATCGCACGCAACATCATCAAATATGAT 686 >seq161787 Length=2259 Score = 82.4 bits (90), Expect = 1e-11 Identities = 216/326 (66%), Gaps = 9/326 (3%) Strand=Plus/Minus Query 5336 TGTTCTATTGAAACGTTCACATATGGATGCTTTGAGATTGCTGAATGTTGAATACAGATT 5395 |||||| || || | |||| || || ||||| | | ||||||||| ||| |||| Sbjct 1354 TGTTCTGTTAAATCTTTCAACAATTGACGCTTTTAATTCGCTGAATGTATGATAGTGATT 1295 Query 5396 TATCTTGTGCTGCTTCATCAGATCTTTGAATTCTTTGTTGTAAAACTCTTTACCCTGATC 5455 || | | ||||| |||| ||||| | || |||| || ||||| || || Sbjct 1294 AATTGCCTTTTTTTTCATATAGTCTTGGAATTTTAAATTAAAAAATTCCTTACCTTGGTC 1235 Query 5456 AACATGGAGATTCTTAGGGA------TACGACCTTGCTGAAGTACAGACTTCATAGCACT 5509 | ||| | || ||||| | ||| | ||| || || | || || | || ||| Sbjct 1234 AGAATGAATGTTTTTAGGAACAGATTTAC-ATCTT-CT-AATAATTGATTTTAAAGAACT 1178 Query 5510 TGTGACATCTACACCACTTTTAGACTTAATTGGAACTGCCCAGGCATATTTTGAAAATAT 5569 | |||| || || |||| | || | || |||| | |||||||||||||| | Sbjct 1177 TAAAACATTATCAGCATTTTTTGTTTTTACAGGTTCTGCATAAGCATATTTTGAAAACGT 1118 Query 5570 ATCTATGATTGTAAGCAGATACTTGTATCCTTTATTGACTGTTGCATATGGAATCATCTC 5629 || |||| ||| |||| ||| || |||||||| || | | ||||| |||||||| || Sbjct 1117 GTCAATGACTGTCAGCATATATTTATATCCTTTGTTAAACTTAGCATAAGGAATCATTTC 1058 Query 5630 AACCAAGTCAGCTTGCCAAGTCTCAT 5655 ||| | ||| |||||| || |||| Sbjct 1057 AACTAGATCAATTTGCCATGTGTCAT 1032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97728544081618