Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq139863 316 2e-81 seq25052 107 2e-18 >seq139863 Length=2592 Score = 316 bits (350), Expect = 2e-81 Identities = 510/730 (70%), Gaps = 9/730 (1%) Strand=Plus/Plus Query 21274 AAATATTTTA--TTA-CAAC--CCAGTTCTGATAATAATCTATCTGCTACAAATTCTATA 21328 ||| |||||| ||| |||| ||| |||| ||||||| || || |||||||| ||| Sbjct 1278 AAACATTTTACTTTATCAACTCCCAATTCTCTCAATAATCGGTCAGCAACAAATTCAATA 1337 Query 21329 TATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAA 21388 ||||| ||||||| | ||||||||||| || || |||||||| | || | || ||| Sbjct 1338 TATTGCGACATTAAATTGCAATTCATACCAATTAAATTTACAGGTAATGCGTCAGTTAAA 1397 Query 21389 AAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGG 21448 || || ||| || || |||||| || || | || || || | |||| || Sbjct 1398 AATTCTTGTTCAATTTTCACTGCTTCAGATATAATTTCAATAATTCTTTCTTTACTTGGT 1457 Query 21449 GGATACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTA 21508 | | ||| ||||||||||| |||||||||||||||||||| || |||||||| || Sbjct 1458 TTTTGTATTAAATGTTTAAACATTAAACATGCAAAATCACAATGTAATCCTTCATCTCTT 1517 Query 21509 CTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAAT 21568 |||| |||||| ||||||||||| || ||||| | || | ||||||||||||||| Sbjct 1518 GAAATTAGTTCATTTGAAAATGTTAATCCTGGCATAAGGCCACGTTTTTTTAACCAAAAT 1577 Query 21569 ATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAAT-CG 21627 ||||| ||||| || |||||| || || ||||| || ||||| |||| |||| || Sbjct 1578 ATTGATGCAAAACTACCACTAAAGAATATTCCTTCAACTGCTGCAAAAGCAA-TAATACG 1636 Query 21628 TTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTT 21687 ||| || || ||| | |||| |||||| | | |||||| | || |||| ||| Sbjct 1637 TTCTCCATAATTAGCTGATTTACTTGTTATCCAATCTAATGCCCAATCAGCTTTTTTTTT 1696 Query 21688 AATACAATCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTAT 21747 || ||| | ||| ||||| || || ||||| || | |||| | | ||| |||| Sbjct 1697 AACACATGGTAATGTTTCAATTGCATTAAAAAGGAAATCTCTTTCTTTTGGATCCTTTAT 1756 Query 21748 GNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAA 21807 || |||||||| ||||| | |||||| || ||||| ||||| Sbjct 1757 ATATGTATCAATTAAAATGCTGTACATTTCGGAATGAACATTTTCCATAGCTATTTGAAA 1816 Query 21808 TCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGT 21866 ||| |||||||| | || || | |||||| || || ||||| |||| | | | | Sbjct 1817 TCCATAAAAACAACGCGCTTCAGTTACTTGAACTTCTTGACTAAAA-CGTTCAACAAGAT 1875 Query 21867 TTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATC 21926 |||| || ||||| ||||| || ||||||||||| || | || | ||| |||| | Sbjct 1876 TTTCGTTAACTATACCATCTGAAGCAGCAAAAAATGCTAAAACATGTGATATGAAATGAC 1935 Query 21927 GTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAG 21986 |||| | |||||||| ||||| || | ||| ||||||||||| ||||| ||| Sbjct 1936 GTTCTCCAGAAGTTAATTTGTTCCAGTCCGTCATATCCTTTGATAAATCAACTTCCTCAA 1995 Query 21987 TTGTCCaaaa 21996 |||||||| Sbjct 1996 CCGTCCAAAA 2005 Score = 102 bits (112), Expect = 9e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 |||||| || || || | | ||| ||||||||| | |||| | | |||| ||| Sbjct 1070 TTAAAAGTCTGCGTCAAGAGTGAATACATTATCTAATGGGTTTGCTGTTACTCCCCATTT 1129 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 |||||| |||| |||| ||||||| ||||| ||||| || || ||||||||||| |||| Sbjct 1130 TTGATATTCACCAACTTTTTTTTCAAAAAAGTTTGTTTTACCGTCCAATGATATTAATTC 1189 Query 21247 CATAAAATCAAATGGATTT 21265 ||||||| ||| |||||| Sbjct 1190 CATAAAACTAAAAGGATTT 1208 >seq25052 Length=3952 Score = 107 bits (118), Expect = 2e-18 Identities = 303/454 (67%), Gaps = 15/454 (3%) Strand=Plus/Plus Query 132427 ATACAAACCTGGAAAAAGAGGTTGGTTGAAGATaaaaaaaGATTATTTAGAGAATGGGTC 132486 ||| ||||| |||||| |||||||||| || || ||||||||||||||| | || Sbjct 2525 ATATAAACCGGGAAAACGAGGTTGGTTAAAAATTAAAAAAGATTATTTATTTCAAGGACA 2584 Query 132487 TATGGCAGATTCCGCAGATCTTGTGGTATTAGGTTCTTATTATGGAAAAGGATCAAAGGG 132546 ||||| ||||| || ||| | || |||| ||| ||| | ||| | || ||| || Sbjct 2585 AATGGCTGATTCAGCTGATTTAGTTATATTGGGTGCTTGGTTTGGTACTGGTAAAAAAGG 2644 Query 132547 AGGAATACAATCAATATTTTTAATGGGATGTTATGATTCAGATCGTATGATTTGGAAGAC 132606 || || | |||||||| ||||||| |||||| || || | | ||| || Sbjct 2645 TGGTATGTTAAGTATATTTTTGATGGGATCATATGATACAAATACAAAATTATGGGGAAC 2704 Query 132607 TGTAACAAAA---TGTTCTGGTCATGACGATAAAACGCTTCAACAATTGCAAGAAGATAT 132663 |||||||||| ||||||| || ||| ||| | || ||| ||| | || || Sbjct 2705 TGTAACAAAAGTTCATTCTGGTTTAGATGATTCAACAATGGAATCATTACAAAATGA-AT 2763 Query 132664 GGAATTAATAAAAATAAGCCGCGAACCTGATAAAATT--CCAAAATGGTTATCCGTTAAT 132721 |||| || || || | | | | |||||| ||||||||| | ||| | Sbjct 2764 TGAATACATTAATGGAA-CGTTGTAATAGTAAAAATTTACCAAAATGGCTTAATGTTTCT 2822 Query 132722 AAA-ATATATTATCCTGATTTTGTAGTGAAGGATCC--TAGATCGGCACCCGTTTGGGAA 132778 ||| | || || || |||||| | | || |||| | ||| | || || |||||| Sbjct 2823 AAACAATTAATA-CCGGATTTTATTGCAAAAAATCCATTTGATATG--CCTGTATGGGAA 2879 Query 132779 ATTGTGGGATCCGGATTTACAAAATCCCAATATCATACTGCCGATGGAATTTCTATCAGA 132838 ||| || | | |||||||||||| || |||||||| |||| || ||||| ||| Sbjct 2880 ATTACTGGTGCTGAATTTACAAAATCAGAAGTACATACTGCAAATGGTATATCTATTAGA 2939 Query 132839 TTTCCAAG-ATGTCAAAGAATCAGAAATGATAAA 132871 ||||| | || |||| ||| || |||||||| Sbjct 2940 TTTCCTCGTATAACAAA-AATTCGAGATGATAAA 2972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530495803983080