Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq210017 161 3e-34 seq139863 127 5e-24 >seq210017 Length=1697 Score = 161 bits (178), Expect = 3e-34 Identities = 451/685 (66%), Gaps = 14/685 (2%) Strand=Plus/Minus Query 363631 GATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCA 363690 ||||| || || ||||| ||| | ||| || | | ||||| | ||||| ||| || Sbjct 1625 GATTCTATAGAAGGTATTTTTAAAACAGTTGAACAGTGTGCAATGATTTCAAAGTCAGCT 1566 Query 363691 GGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAG-AACAGTTACATTCGCGG-- 363746 || || |||||| || | || | |||||||| ||| |||| ||| | || | Sbjct 1565 GGTGGCATTGGTTTAAATGTTCATTGTATTCGTGCAACAGGAACA---ACAATTGCTGGT 1509 Query 363747 -CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 || | |||| | || || || | || || ||| | | || || | ||| ||| Sbjct 1508 ACAAATGGGGTTTCT--AACGGCTTAGTACCTATGTTGAGAGTTTTCAATAATGTTGCTC 1451 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | ||||| ||||| |||||| || | ||| || ||||| || ||||| || || Sbjct 1450 GATACGTTGACCAAGGTGGAAATAAAAGGCCAGGAGCTTTTGCAATATATCTAGAACCAT 1391 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 ||| | ||||| |||| ||| | || | ||| || || |||||||||||| | Sbjct 1390 GGCATTCTGATATACTTGAATTTTTAGACTTAAAGAAGAATACTGGAAAAGAGGAAACAC 1331 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 | || | |||||||| ||||| | ||| | | || |||||||| | || || Sbjct 1330 GAGCCAGAGATCTGTTTTATGCTTTGTGGATACCAGATTTGTTTATGAAAAGAGTTGAAT 1271 Query 363986 CAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGG 364045 | | | | ||||| | | |||||||| | || |||||| | ||||||||||| Sbjct 1270 CCGACGATGAATGGTCTTTAATGTGCCCACATAAGTGCCCAGGTTTACACGATGTATGGG 1211 Query 364046 GTGACGACTATGTTGC--TCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGAC 364103 |||| || | | | | ||||| ||| |||||| ||||| | ||| ||| | Sbjct 1210 GTGAGGAATTCGAAGAATTATATACTAAA--TATGAAAAAGAGGGTAGAGCTAATAAAAA 1153 Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163 ||| ||||| | || |||||||| || || || || ||| |||||||||||||||| Sbjct 1152 AATAAAGGCACAAACACTTTGGTTTGCAATTATTGAGTCACAGGTTGAGACAGGAACACC 1093 Query 364164 CTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 || ||| | ||||||||| | || || | || ||| ||||| | | || ||||| Sbjct 1092 TTACATGCTATACAAAGATGCTTGTAATAGAAAAAGCAATCAGCAAAATGTGGGAACAAT 1033 Query 364224 TCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283 || || || |||| || || ||| | || || | | || || || | ||| || Sbjct 1032 TCGTTGCAGTAATTTATGCACTGAAATTGTGGAGTATTCTTCGCCAGATGAAATTGCTGT 973 Query 364284 ATGTAACCTTGCGTCGATCGCGCTT 364308 |||||| | ||||| || || ||| Sbjct 972 ATGTAATTTGGCGTCTATAGCTCTT 948 >seq139863 Length=2592 Score = 127 bits (140), Expect = 5e-24 Identities = 231/334 (69%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTG- 22546 |||||| ||||||| ||||| | |||||||| || |||||| ||| || ||||| Sbjct 1639 GAACGTATTATTGCTTTTGCAGCAGTTGAAGGAATATTCTTTAGTGGTAG--TTTTGCAT 1582 Query 22547 CAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAA 22606 |||| |||||| |||||||||||| ||||||| || |||| ||||||||||| ||| Sbjct 1581 CAATATTTTGGTTAAAAAAACGTGGCCTTATGCCAGGATTAACATTTTCAAATGAACTAA 1522 Query 22607 TTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCA 22666 || ||||||| || | ||| |||||||| ||| | | | | || ||| | | Sbjct 1521 TTTCAAGAGATGAAGGATTACATTGTGATTTTGCATGTTTAATGTTT---AAACATTTAA 1465 Query 22667 TTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAAC 22726 | || |||| | |||| | |||| ||||| | | ||||| || |||||| Sbjct 1464 TACAAAAACCAAGTAAAGAAAGAATTATTGAAATTATATCTGAAGCAGTGAAAATTGAAC 1405 Query 22727 GTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGA 22786 |||| | || || ||||| |||| | | |||||||| ||| | | | |||| Sbjct 1404 AAGAATTTTTAACTGACGCATTACCTGTAAATTTAATTGGTATGAATTGCAATTTAATGT 1345 Query 22787 GTACATATATTAAATTTGTTGCAGATCGTCTATT 22820 ||||||| |||||||||| || || |||| Sbjct 1344 CGCAATATATTGAATTTGTTGCTGACCGATTATT 1311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1299824771349894