Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq195115 116 2e-21 seq87369 104 2e-17 seq92394 87.8 1e-12 >seq195115 Length=2340 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| || | || || ||||||||||| | || | || || || || |||||||| Sbjct 2139 ATGGGTACGGTAAATGTTAATCGTAATGTAACCGATGTTTTTTATCGTTATAAAATGCCA 2080 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 || || || || || || ||||| || || ||||||||||| || || || || ||| Sbjct 2079 CGTATAATGGCAAAAGTTGAAGGTAAAGGTAATGGTATTAAAACGGTTATCGTAAATATG 2020 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 ||||||| ||||| || | ||||| || || || || || || |||||||| || || Sbjct 2019 GCTGAAGTTGCTAAAGCTATTGGACGTCCAGCTACATATCCAACAAAATATTTTGGTTGT 1960 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 ||| | || || || || || || ||||| || Sbjct 1959 GAATTGGGTGCACAAACTCAATTCGATCATAA 1928 >seq87369 Length=4602 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 |||||||| | ||||||||||||||||||||||||||| | || | ||||||| Sbjct 3034 AAGCCCGTCCTTTTGGCTGTGGTTTCGCTAGATAGTAGACACGGACAGTAGAAATCTCGG 2975 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||| ||||||||||||||||||||| Sbjct 2974 TAATCCATTCATGAGCGTCACTAATTAGATGACGA 2940 >seq92394 Length=5291 Score = 87.8 bits (96), Expect = 1e-12 Identities = 74/91 (81%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 ||||| ||||||||| |||| |||||||||||||||||| || | | |||||| | Sbjct 963 AAGCCGGTTCCCTTGACTGTCGTTTCGCTAGATAGTAGAGAGCGACAGTAGGAATCTCAT 1022 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATG 25987 | |||| || |||||||||||| |||||||| Sbjct 1023 TTATCCATTAATGCGCGTCACTGATTAGATG 1053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334084568293427