Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq139863 410 1e-109 seq55413 131 2e-25 seq158631 123 3e-23 seq28180 123 3e-23 seq16706 123 3e-23 seq19853 84.2 2e-11 seq100022 82.4 8e-11 >seq139863 Length=2592 Score = 410 bits (454), Expect = 1e-109 Identities = 518/710 (73%), Gaps = 4/710 (1%) Strand=Plus/Plus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 |||||||| ||||| |||||||| || || || ||||| |||| |||||||| || | Sbjct 1310 CAATAATCGGTCAGCAACAAATTCAATATATTGCGACATTAAATTGCAATTCATACCAAT 1369 Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 | | |||||||| ||||| || || || |||| || ||| || ||||| | Sbjct 1370 TAAATTTACAGGTAATGCGTCAGTTAAAAATTCTTGTTCAATTTTCACTGCTTCAGATAT 1429 Query 93037 GATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 ||||| || | ||| || ||||||||||| | || || ||||||| || || Sbjct 1430 AATTTCAATAATTCTTTCTTTACTTGGTTTTTGTATTAAATGTTTAAACATTAAACATGC 1489 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 ||| || |||||| ||||| |||| ||| || | ||||| |||||||| ||||| Sbjct 1490 AAAATCACAATGTAATCCTTCATCTCTTGAAATTAGTTCATTTGAAAATGTTAATCCTGG 1549 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | || || ||||| || | |||||||||||| |||||||||||| ||| ||||| || Sbjct 1550 CATAAGGCCACGTTTTTTTAACCAAAATATTGATGCAAAACTACCACTAAAGAATATTCC 1609 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||| || |||||||| || | ||||||||| || |||| || || ||||| | ||||| Sbjct 1610 TTCAACTGCTGCAAAAGCAATAATACGTTCTCCATAATTAGCTGATTTACTTGTTATCCA 1669 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 | ||| |||||||| |||||||| |||| ||| |||| |||||| || || ||||| || Sbjct 1670 ATCTAATGCCCAATCAGCTTTTTTTTTAACACATGGTAATGTTTCAATTGCATTAAAAAG 1729 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | |||||| || | | ||| ||| |||||||| ||||| | |||||||| || Sbjct 1730 GAAATCTCTTTCTTTTGGATCCTTTATATATGTATCAATTAAAATGCTGTACATTTCGGA 1789 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| ||||| ||||| || ||||| ||||| || ||||| | ||||| || | || || Sbjct 1790 ATGAACATTTTCCATAGCTATTTGAAATCCATAAAAACAACGCGCTTCAGTTACTTGAAC 1849 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 ||||||| ||| | || || |||||||| || ||||||||||| || || |||||||| Sbjct 1850 TTCTTGACTAAAACGTTCAACAAGATTTTCGTTAACTATACCATCTGAAGCAGCAAAAAA 1909 Query 93517 aGCCAATATATGCTTTATAAAATG--TTTCTCATCATCTTTAAGCTTATCCCAATCGGAT 93574 || || | ||| ||| ||||| ||||| || | | || | ||| || | Sbjct 1910 TGCTAAAACATGTGATATGAAATGACGTTCTC--CAGAAGTTAATTTGTTCCAGTCCGTC 1967 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 | ||| ||||| | ||| ||||| || || |||||||| |||||||| || Sbjct 1968 ATATCCTTTGATAAATCAACTTCCTCAACCGTCCAAAAAGATGCTTCAGC 2017 >seq55413 Length=1564 Score = 131 bits (144), Expect = 2e-25 Identities = 81/86 (94%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 495 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGC 554 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 555 GTGGGTTCGAACCCCACACCTGACAA 580 >seq158631 Length=1848 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 1674 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGC 1615 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||| |||||||||| Sbjct 1614 GTGGGTTCGAACCCAACACCTGACA 1590 >seq28180 Length=2945 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 1337 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 1396 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 1397 GTGGGTTCGAACCCCACACCTGACA 1421 >seq16706 Length=2247 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 1599 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 1540 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 1539 GTGGGTTCGAACCCCACACCTGACA 1515 >seq19853 Length=2250 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 162721 AACAAACATACATATaaaaaaaTCAGAATTACCTCTTGTGAGAATCGAACTCACGACAAC 162780 |||||| | | | | |||||||| || |||| |||||| || ||||||||||| | Sbjct 141 AACAAAAAAAAACA-AAAAAAATTGTTTTTGCCTCCTGTGAGGATTGAACTCACGACCCC 199 Query 162781 CGGCGTATAAGACCGATGCTCTAACCACTGAGCTAAAGAGGCTACATTAA 162830 || || |||||| |||||| |||||||||||||||||||||||| || Sbjct 200 AGGTTTACAAGACCTGTGCTCT-ACCACTGAGCTAAAGAGGCTACATCAA 248 >seq100022 Length=1571 Score = 82.4 bits (90), Expect = 8e-11 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC 126314 |||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 1467 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCC 1418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555389873079080