Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_008689.1 Length=44857 Score E Sequences producing significant alignments: (Bits) Value seq168920 134 4e-27 seq189821 91.5 4e-14 >seq168920 Length=2240 Score = 134 bits (148), Expect = 4e-27 Identities = 206/290 (71%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 40426 AAAATTATCTTATATGCATACACTCAATCTGTATTTTCTGGTCGTAGAATAGAGAAATTA 40485 || || || |||| ||| ||||| |||||||||||||||||||||| || || ||| Sbjct 1776 AAGATGATTTTATGTGCTTACACGCAATCTGTATTTTCTGGTCGTAAGATTGAAGCGTTA 1717 Query 40486 CTTCATGACAGTATTCGAATGATGTGGTTAGCTCAAAATCAAACACCTTCTTATAAAACT 40545 | ||||||||||| ||||||||| | |||||| | | |||| |||| || Sbjct 1716 ACGAAAGACAGTATTCGCATGATGTGGCTCACTCAAAGTTATCAACCTAGTTATCGGACC 1657 Query 40546 ATTAATCGTTTTAGAGTAAATCCTAATACTG-ATGCATTAATTGAATCTTTATTTATTCA 40604 || |||||||| |||| |||||| || || ||||| | || | || | || Sbjct 1656 ATCAATCGTTTCCGAGTGAATCCT-TTAGTGAATGCACTCCTTCGGGAGTGCTTCGTCCA 1598 Query 40605 GTTTCATAGTCAATGTTTAAAGCAAAATCTTATTGATGATAATTCAATTTTTATTGATGG 40664 ||| | ||| |||| | ||| || | | || ||||| | | |||||||||||||| Sbjct 1597 GTTCCGTAGCCAATTAGTCAAGGAACAATTAATCGATGAAGAAGCTATTTTTATTGATGG 1538 Query 40665 TACAAAAGTAGAAGCTAATGCCAATAGGTATACATTTGTGTGGAAGAAAA 40714 |||||| | ||||| ||||| |||| || || ||||| ||| |||||| Sbjct 1537 TACAAAGATTGAAGCCAATGCTAATAAATACACCTTTGTTTGG-AGAAAA 1489 >seq189821 Length=1731 Score = 91.5 bits (100), Expect = 4e-14 Identities = 204/298 (68%), Gaps = 19/298 (6%) Strand=Plus/Minus Query 40184 TaaaaaaaTAAGA-CACTTTCGTATAATTTAATAAATACCACTAAACTAAATTAACGAGG 40242 || |||||||||| ||| || | ||| ||| | || ||| || |||| || ||||| Sbjct 307 TACAAAAATAAGAACACCTTTGC-TAAAATAAAAGTAACTACTCAAATAAACTAGCGAGG 249 Query 40243 TGC-CTTATGTATAAAAATTATAACATGACCCAACTTACACTACCAATAGA-----AACT 40296 || ||||||| ||||||||||| || | ||| | | || || |||| | | Sbjct 248 TGTTCTTATGTTTAAAAATTATACCACAAATCAAGTCATTCTTCCTCTAGATTTTAATTT 189 Query 40297 TCTGTTAGAATTCCTCAAAATGATATTTCA--CGATATGTTAATGAAATTGTTGAAACGA 40354 || ||||||| ||||||||||| | || || | || || | ||||||| | Sbjct 188 TCAGTTAGAAA-----AAAATGATATTGCGTTCGTGAT--TGATCAATTAGTTGAAAGTA 136 Query 40355 TACCTGAT-AGCGAATTCGATGAATTCAGACATCATCGTGGCGCAACATCCTATCATCCA 40413 | || || | || ||| |||| ||||| || | | || |||||||| Sbjct 135 TTCCGGAGGAACGTTTTCTCCCTTTTCAC-CATCAAATGGGGCCTTCTTCTTATCATCCG 77 Query 40414 AAAATGATGTTAAAAATTATCTTATATGCATACACTCAATCTGTATTTTCTGGTCGTA 40471 ||||||||| | || || || |||| ||| ||||| |||||||||||||||||||||| Sbjct 76 AAAATGATGATGAAGATGATTTTATGTGCTTACACGCAATCTGTATTTTCTGGTCGTA 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143060901368326