Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq139863 405 6e-108 seq25052 156 5e-33 >seq139863 Length=2592 Score = 405 bits (448), Expect = 6e-108 Identities = 508/693 (73%), Gaps = 12/693 (2%) Strand=Plus/Plus Query 37011 TCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTACT 37070 || ||||||||||| || |||| |||||| | | || |||||||||| ||||| Sbjct 1320 TCAGCAACAAATTCAATATATTGCGACATTAAATTGCAATTCATACCAATTAAATTTACA 1379 Query 37071 GGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAACA 37130 || | ||| || | |||| || ||| ||| | || || || | |||| | || Sbjct 1380 GGTAATGCGTCAGTTAAAAATTCTTGTTCAATTTTCACTGCTTC---AGATATAATTTCA 1436 Query 37131 ATAACT---TCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCA 37187 |||| | |||| | |||| | | |||||| |||||||| |||||||||||||||| Sbjct 1437 ATAATTCTTTCTTTACTTGGTTTTTGTATTAAATGTTTAAACATTAAACATGCAAAATCA 1496 Query 37188 CAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAA 37247 |||||||| ||||||||||| || | |||||| ||||| |||||||||||||| | Sbjct 1497 CAATGTAATCCTTCATCTCTTGAAATTAGTTCATTTGAAAATGTTAATCCTGGCATAAGG 1556 Query 37248 CCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACT 37307 || | |||||| | ||||||||||| ||||||| ||| |||||| || ||||||||| Sbjct 1557 CCACGTTTTTTTAACCAAAATATTGATGCAAAACTACCACTAAAGAATATTCCTTCAACT 1616 Query 37308 GCTGCAAATGCTACAAGACGTGTACCGAAAGT---TGAACTATAATCAGAAATCCAtttt 37364 |||||||| || | || |||| || || | ||| | || | | ||||| | | Sbjct 1617 GCTGCAAAAGCAATAATACGTTCTCCATAATTAGCTGA--TTTACTT-GTTATCCAATCT 1673 Query 37365 tttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAG 37424 || |||||| || ||| |||||||||| | |||||||||||| || || || || Sbjct 1674 AATGCCCAATCAGCTTTTTTTTTAACACATGGTAATGTTTCAATTGCATTAAAAAGGAAA 1733 Query 37425 tttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGA 37484 | | |||||| ||| ||||||| |||||||||| | || |||||||| || ||| Sbjct 1734 TCTCTTTCTTTTGGATCCTTTATATATGTATCAATTAAAATGCTGTACATTTCGGAATGA 1793 Query 37485 ATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCG 37544 | |||||| |||||||| ||||| ||||||||||| | ||||||| || |||||| || Sbjct 1794 ACATTTTCCATAGCTATTTGAAATCCATAAAAACAACGCGCTTCAGTTACTTGAACTTCT 1853 Query 37545 TTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCA 37604 | | ||| | | | | | ||||| |||||||| ||||| ||| ||||| || || Sbjct 1854 TGACTAAAACGTTCAACAAGATTTTCGTTAACTATACCATCTGAAGCAGCAAAAAATGCT 1913 Query 37605 AGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCT 37664 | ||||| | ||| ||||| | ||| || | |||||| ||||| || | ||||| Sbjct 1914 AAAACATGTGATATGAAATGACGTTCTCCAGAAGTTAATTTGTTCCAGTCCGTCATATCC 1973 Query 37665 TTTGATAAATCAACTTCATCAACGGTCCAAAAA 37697 ||||||||||||||||| ||||| ||||||||| Sbjct 1974 TTTGATAAATCAACTTCCTCAACCGTCCAAAAA 2006 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 36876 ACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGT 36935 |||||| |||||||||||| |||||| | |||| ||||| ||||| || || || | | Sbjct 1119 ACTCCCCATTTTTGATATTCACCAACTTTTTTTTCAAAAAAGTTTGTTTTACCGTCCAAT 1178 Query 36936 GATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATAT 36979 ||||| |||||||||| ||| ||||| | |||||||||||| Sbjct 1179 GATATTAATTCCATAAAACTAAAAGGATTTGGTGTATTATATAT 1222 >seq25052 Length=3952 Score = 156 bits (172), Expect = 5e-33 Identities = 342/498 (69%), Gaps = 27/498 (5%) Strand=Plus/Plus Query 142382 GGTTTAGAAGGAGCTATTTTAAAATATCCAAATGATATGTATATACCAGGTAAAAGAAAA 142441 ||||||||||| | | || ||| || || | | | |||| ||| || ||| || Sbjct 2487 GGTTTAGAAGGTCTTGTATTGAAAAATGTAACTAGTTTATATAAACCGGGAAAACGAGGT 2546 Query 142442 TGGATAAAGATAAAAAGGGATTACTTAAACGATGGTGCAATGGCAGATTCAGCAGATTTA 142501 ||| |||| || |||| ||||| ||| | || |||||| |||||||| |||||| Sbjct 2547 TGGTTAAAAATTAAAAAAGATTATTTATTTCAAGGACAAATGGCTGATTCAGCTGATTTA 2606 Query 142502 GTCGTATTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGGGATAATGTCTATATTT 142561 || |||||||||| | | ||||| ||||||| | ||| | ||| ||||||| Sbjct 2607 GTTATATTGGGTGCTTGGTTTGGTACTGGTAAAAAAGGTGGTATGTTAAG---TATATTT 2663 Query 142562 CTTATGGGTTGTTATGATGAAGATACAAATACATGGAAAACTGTTACAAAATGTTCA--- 142618 | ||||| | |||||| | ||||||| |||| |||||| |||||| ||||| Sbjct 2664 TTGATGGGATCATATGATACAAATACAAAATTATGGGGAACTGTAACAAAA-GTTCATTC 2722 Query 142619 -GGATTCAATGATGAAACATTAAAGGAATTACAG--TCAATTGA-TATGATAA---AAAT 142671 || || ||||| |||| | | |||||| | |||||| || ||| || Sbjct 2723 TGGTTTAGATGATTCAACAATGGAATCATTACAAAATGAATTGAATACATTAATGGAACG 2782 Query 142672 CAGTAAAAATAAAGATAAAATACCAACATGGTTAAATATTAACAGTATACATT--AT-CC 142728 |||| | |||| || |||||| |||| | ||| || || ||| | || || Sbjct 2783 TTGTAATAGTAAAAATT---TACCAAAATGGCTTAATGTTTC---TAAACAATTAATACC 2836 Query 142729 AGATTTTATTGTTAATAATCCAAAA-ACATCACCTGTTTGGGAAATATCCGGATATGAAT 142787 |||||||||| || |||||| | || ||||| |||||||| | || ||||| Sbjct 2837 GGATTTTATTGCAAAAAATCCATTTGATATG-CCTGTATGGGAAATTACTGGTGCTGAAT 2895 Query 142788 TTACAAAATCACCATCTCATACAGCAGATGGGATATCTATTAGATTTCCTAGATGTAA-A 142846 ||||||||||| | ||||| ||| |||| |||||||||||||||||| | | ||| | Sbjct 2896 TTACAAAATCAGAAGTACATACTGCAAATGGTATATCTATTAGATTTCCTCG-TATAACA 2954 Query 142847 AATATAAGAAATGATAAA 142864 || || || |||||||| Sbjct 2955 AAAATTCGAGATGATAAA 2972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590752217384680