Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq209203 149 1e-30 seq211115 113 1e-19 >seq209203 Length=1405 Score = 149 bits (164), Expect = 1e-30 Identities = 368/551 (67%), Gaps = 13/551 (2%) Strand=Plus/Minus Query 150311 GGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTTGATGATCTAATTCAGATTCTT 150370 || ||| | || ||| | ||||| || ||| |||| || || |||||| ||| | Sbjct 1363 GGAAAATTAGACCCAATTATTGGACGGGAAGATGAAATTAATCGAGTAATTCGAATTTTA 1304 Query 150371 TCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAA 150430 || || | ||| ||||| ||| | ||| ||||||| || |||||||| |||||| Sbjct 1303 TCACGAAGAACAAAAAATAATCCGGTTTTAATTGGTGAGCCTGGTGTTGGAAAAACAGCG 1244 Query 150431 ATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGAT 150490 || ||||| ||| ||||||| || || | ||| |||||| |||| | | | ||| || Sbjct 1243 ATTGTTGAAGGACTAGCACAGCGAATTGTTAAAGGTGATATTCCTAGTAATTTAAAAAAT 1184 Query 150491 GTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAA 150550 ||| | || ||||||| ||||| | ||||||| | || | || |||||| Sbjct 1183 AAAACAATATATGAATTAGATATGGGAGCATTAATTGCTGGTGCGAAATTTCAAGGTGAA 1124 Query 150551 TTCGAAGAACGTGTAGA--CAATTTGCTACAAGAACTAAAAGAACGCGATG---ATGTTA 150605 || ||||||||| || | | ||| || | || | |||||| ||| || ||| Sbjct 1123 TTTGAAGAACGTTTAAAAGCGGTTT--TAAATAAAGTTAAAGAATCAAATGGCGATATTA 1066 Query 150606 TTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTT 150665 || | || || ||||| | ||| ||| |||| |||||| ||| || || Sbjct 1065 TTTTATTTATTGATGAGTTGCATTTAATTGTGGGAGCTGGTAAGACACAAGGTAGTA--- 1009 Query 150666 TGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATCGGTG 150725 ||||| || ||| |||||||||| || | || || || | | | || |||| Sbjct 1008 TGGATGCTAGTAATTTGTTAAAACCAATGTTAGCGCGTGGCGATTTACATTGTATTGGTG 949 Query 150726 CAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCG-T 150784 |||| || | |||||| ||||| | | |||||||||||||| || || |||| || | Sbjct 948 CAACGACTTTAGATGAACATCGTTTATATATTGAAAAAGATGCTGCGTTAGAGCGACGCT 889 Query 150785 TTCATGAAGGTTGATATTGTTGAACCGACACTTGAAGAAACTCGCCAGATTGTACTTGGT 150844 |||| || || | | || |||| | || |||| |||| | ||| ||| |||| Sbjct 888 TTCA-AAAAGTAGTTGTTAGTGAATCAACCATTGATGAAAGTATTTCAATTTTACGTGGT 830 Query 150845 GTTAAAAGTAC 150855 ||||||| || Sbjct 829 -TTAAAAGAAC 820 >seq211115 Length=3236 Score = 113 bits (124), Expect = 1e-19 Identities = 227/336 (68%), Gaps = 3/336 (1%) Strand=Plus/Plus Query 133904 TTGAAAAATAATCCTGATTCTCGACGTCATATTCTAACTGCATGGAATGTTGGTGAACTA 133963 || ||||| ||||| |||| || ||||||||| | | ||| || ||| | ||| | Sbjct 549 TTAAAAAAGAATCCATATTCACGTCGTCATATTATTAGTGCTTGAAATCCAGCAGAAGTT 608 Query 133964 GATAAAATGACTTTGCCACCATGTCATTGCTTTAGTCAATTCTTCGT---AAATGACGGT 134020 ||| | ||| |||| |||||||||||| || | ||| || | || ||| || | Sbjct 609 GATGAGATGGCTTTACCACCATGTCATACTTTAATTCAGTTTTATGTTTCAAAAGATAAT 668 Query 134021 AAGTTATCATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAAC 134080 || ||| ||| ||||||||||||| ||| | || |||||||| || || || Sbjct 669 AAATTAAGTTGTCAATTATATCAACGTAGTGCGGATGTTTTTTTAGGAGTCCCTTTTAAT 728 Query 134081 ATTGCTTCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAGTTGGT 134140 || || ||| | ||| |||| ||| | | || |||||| ||| ||| | ||||| Sbjct 729 ATCGCAAGTTATGCTTTATTAACCCATTTAATTGCCCAAGTTGTTGGTTTAAATGTTGGC 788 Query 134141 GAGTTTGTATGGATGGGTGGAGATGTTCACATTTATAAAAATCACGTAGAAGCAGTTCAG 134200 || ||||| | |||||| ||| |||||||||||||| | | | || | Sbjct 789 GATTTTGTCCATACTTTAGGAGATTGTCATATTTATAAAAATCATTTTAATCAAATTAAA 848 Query 134201 GAACAACTTTCACGTGAACCTAAAGAATTACCAACT 134236 |||||| | ||||| || || ||||||||||| Sbjct 849 GAACAATTAACACGTTCTCCGCAAAAATTACCAACT 884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1144483300067866