Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq210017 233 1e-56 seq105373 159 2e-34 >seq210017 Length=1697 Score = 233 bits (258), Expect = 1e-56 Identities = 285/389 (73%), Gaps = 0/389 (0%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 |||||| | | |||||| |||||||| ||||||| |||||||| | |||||| |||| Sbjct 1273 TCAACTCTTTTCATAAACAAATCTGGTATCCACAAAGCATAAAACAGATCTCTGGCTCGT 1332 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 |||| |||||||| |||||| |||| ||||| || |||| ||||| || |||||| Sbjct 1333 GTTTCCTCTTTTCCAGTATTCTTCTTTAAGTCTAAAAATTCAAGTATATCAGAATGCCAT 1392 Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101 ||||||| ||| || |||||| ||| ||||| ||||||||| || ||||||| Sbjct 1393 GGTTCTAGATATATTGCAAAAGCTCCTGGCCTTTTATTTCCACCTTGGTCAACGTATCGA 1452 Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTA 26161 ||| | |||||||||| ||||||| || ||||| || | |||| || ||||| | | Sbjct 1453 GCAACATTATTGAAAACTCTCAACATAGGTACTAAGCCGTTAGAAACCCCATTTGTACCA 1512 Query 26162 TGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCAT 26221 ||| | | |||||| | | |||| ||| ||| | ||| || |||||||| | Sbjct 1513 GCAATTGTTGTTCCTGTTGCACGAATACAATGAACATTTAAACCAATGCCACCAGCTGAC 1572 Query 26222 TTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTC 26281 |||||||| |||||| | | |||||| | ||||| |||| ||| ||||| | || Sbjct 1573 TTTGAAATCATTGCACACTGTTCAACTGTTTTAAAAATACCTTCTATAGAATCACTTGTC 1632 Query 26282 ATTCCTAATAAAAAACAAGAAGATAATTG 26310 || |||||||||||| || || | ||| Sbjct 1633 ATAGTTAATAAAAAACATGATGAAAGTTG 1661 Score = 113 bits (124), Expect = 2e-20 Identities = 152/209 (73%), Gaps = 7/209 (3%) Strand=Plus/Plus Query 24982 AAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTC--TT 25039 ||||||| | | ||| || | ||| | || ||||| ||||| ||||| | | || Sbjct 366 AAGATCTTTTAACAAATGATGATTAACAATTTGGAATTCACCAGATAAAACCCGGCGATT 425 Query 25040 ATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTA 25099 || ||| ||||| ||| |||||||||| ||||||| || || || ||||| | || Sbjct 426 ATATATA--TTTGATGTGTATGGTTCAAATGATTCATTGTTACCCAAAATTTGTGCGGTT 483 Query 25100 GATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCT 25159 ||||||||||||||| ||| ||||||| |||||||| | ||||| || | |||| | Sbjct 484 GATGCTGTTGGCATTGGTGCAATTAATAACGAATTTCGAACACCATGTTGAGCAATTTTA 543 Query 25160 TGTTTTAATTTATCCCAATC---TAAATT 25185 | ||||||| | |||||| |||||| Sbjct 544 TCCTTTAATTCAGACCAATCCCATAAATT 572 >seq105373 Length=2707 Score = 159 bits (176), Expect = 2e-34 Identities = 241/341 (71%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 25891 TGGACAGAATAAATGCCAATCAGCATT--TTGCTCAACTTTCTCCATAAATAAATCTGGA 25948 |||||| | |||| ||||||| |||| || || | | ||| |||||||||||||||| Sbjct 923 TGGACACATTAAAGACCAATCACCATTATTTTCTAAGCGTTC--CATAAATAAATCTGGA 980 Query 25949 ATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTT 26008 ||||| | |||| || | |||||| || | ||||||||||||||| ||| ||||| Sbjct 981 ATCCATAACCCATAGAAGAGATCTCTTGCACGAATTTCTTCTTTTCCGGTATTTTTTTTC 1040 Query 26009 AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCT 26068 | |||||| || ||||| ||||||| ||||| ||||||||||| || ||||| ||| Sbjct 1041 AAATCTAAAAATTCAAATATATCTGCATGCCACGGTTCTAAATAAATTGCAAATGAACCG 1100 Query 26069 TTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATT 26128 |||||| ||||||| | || ||||||| | |||||| || | |||| Sbjct 1101 GGTCTTTTATTAACACCTTGTCCAACAAATCTTGCTAAATTATTGAATACACGTAGCATT 1160 Query 26129 GGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATA 26188 ||||| | ||| |||| ||||| ||| | | ||| | ||| | | | || Sbjct 1161 GGAACAATTCCGTTTGACTTTCCGTCTGTTCCAGCAATTGAAGTCCCTTTTGCCCGTATG 1220 Query 26189 TCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAAT 26229 ||| || | ||| ||||||||||| |||||||||| Sbjct 1221 CAATGAATATTTAAACCAATTCCACCAGCAGATTTTGAAAT 1261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252388314220775